Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02866 ATGAACGAAGAAGGTTCGACCTCCAACGACAACGAGGCTCTGATAGGGTCCTTAGTCCGAGAAGAGGGTCACATATACTCCCTCGCTGCAACCAAGGACTTGTTATACACGGGTTCAGAGAGTAAAAATATTCGCGTGTGGAAGAACCAAAAGGAGTTCACGGGGTTCAAATGCCACAGCGGCTTGGTGAAACGGCACCGTAACGTGTTGTGGATTAAACACTACGACGCCATTTCATGTCTGGCCGTGACAGAGGATCATTCTTATATATACTCTGCCTCGTGGGATAGAACTTTCAAAGTGTGGAGAGCGTCCAATTTCAAGTGTCTAGAGTCTGTGATAGCCCATGAGGATGCTGTTAATGCGCTTGTTGTGGGGTTGGACGACTTGGTTTTCACGGGCTCGGCTGACGGCTCGGTTAAGATTTGGCGGCGGGAGGTTCACGGGAAAAGGACAAAACATTTTTTCTCGCACACGTTGTTGAAGCAAGAGTGTGCGGTGACGGCGCTGACGATGAGCGGCGAGGGGAATTTTTTATACGCGGGTTCTTCCGATGGGTTGGTGAATTATTGGGTGAGAGAGACAAATTGGGAGCACAGGGGCACGTTAAGGGGGCACAAGTTGGCCATTTTGTGTTTGGCTGCTGCAGGAAGTTTGATCTTCAGTGGGTCTGCTGACATGTCCATATGCGTGTGGAAGAGGACACTGAGTCAGGAGCACACGTGTCTTAATGTTTTGTCCGGCCACAGTGGCCCGGTTAAGTGTCTGGCGGCGGAGAGGGATCTCGACGGCATGTGCAACGAGCGACGGTGGATTTTGTACAGTGGTAGTTTGGATAAGTCCGTTAAGATGTGGAAGGTCTCCGAGAATTCAACTGCACAACACAACCACCAACCACCACGGCATAGTGTTGATCACTTCCCTATAGTTTCATCGTTGAAGAGAATGGGGTCCAAGAGATTCTAG 966 0.5021 MNEEGSTSNDNEALIGSLVREEGHIYSLAATKDLLYTGSESKNIRVWKNQKEFTGFKCHSGLVKRHRNVLWIKHYDAISCLAVTEDHSYIYSASWDRTFKVWRASNFKCLESVIAHEDAVNALVVGLDDLVFTGSADGSVKIWRREVHGKRTKHFFSHTLLKQECAVTALTMSGEGNFLYAGSSDGLVNYWVRETNWEHRGTLRGHKLAILCLAAAGSLIFSGSADMSICVWKRTLSQEHTCLNVLSGHSGPVKCLAAERDLDGMCNERRWILYSGSLDKSVKMWKVSENSTAQHNHQPPRHSVDHFPIVSSLKRMGSKRF 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02866 321 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 113 143 - -
Vimu7g02866 321 Pfam WD domain, G-beta repeat 74 102 IPR001680 GO:0005515
Vimu7g02866 321 Pfam WD domain, G-beta repeat 108 143 IPR001680 GO:0005515
Vimu7g02866 321 Pfam WD domain, G-beta repeat 241 286 IPR001680 GO:0005515
Vimu7g02866 321 Pfam WD domain, G-beta repeat 157 191 IPR001680 GO:0005515
Vimu7g02866 321 Pfam WD domain, G-beta repeat 198 233 IPR001680 GO:0005515
Vimu7g02866 321 FunFam BnaA09g28200D protein 61 148 - -
Vimu7g02866 321 Gene3D - 2 153 IPR015943 GO:0005515
Vimu7g02866 321 Gene3D - 154 309 IPR015943 GO:0005515
Vimu7g02866 321 ProSiteProfiles Trp-Asp (WD) repeats profile. 71 112 IPR001680 GO:0005515
Vimu7g02866 321 ProSiteProfiles Trp-Asp (WD) repeats profile. 203 233 IPR001680 GO:0005515
Vimu7g02866 321 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 11 64 IPR045182 -
Vimu7g02866 321 ProSiteProfiles Trp-Asp (WD) repeats profile. 246 295 IPR001680 GO:0005515
Vimu7g02866 321 SUPERFAMILY WD40 repeat-like 14 295 IPR036322 GO:0005515
Vimu7g02866 321 ProSiteProfiles Trp-Asp (WD) repeats profile. 113 143 IPR001680 GO:0005515
Vimu7g02866 321 PRINTS G protein beta WD-40 repeat signature 90 104 IPR020472 -
Vimu7g02866 321 PRINTS G protein beta WD-40 repeat signature 131 145 IPR020472 -
Vimu7g02866 321 PRINTS G protein beta WD-40 repeat signature 273 287 IPR020472 -
Vimu7g02866 321 SMART WD40_4 148 192 IPR001680 GO:0005515
Vimu7g02866 321 SMART WD40_4 106 144 IPR001680 GO:0005515
Vimu7g02866 321 SMART WD40_4 65 103 IPR001680 GO:0005515
Vimu7g02866 321 SMART WD40_4 196 233 IPR001680 GO:0005515
Vimu7g02866 321 SMART WD40_4 11 48 IPR001680 GO:0005515
Vimu7g02866 321 SMART WD40_4 239 286 IPR001680 GO:0005515
Vimu7g02866 321 ProSiteProfiles Trp-Asp (WD) repeats profile. 160 191 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02866 Vimu-Chr7 24193627 24194763 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02866 110 288 Miscellaneous Gene Families AT5G08390 26.230 1.94e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02866 - - gmx:100819990 479.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02866 7 24193627 24194763 Vimu7g02866 7 24193627 24194763 ECH