Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02847 ATGGTCTCCGAATCCGAACTCATCGGCCGCCTCCGCGAGTTCCTCCGGAGTTCCGACCTCAACACCACCACCACCGCCACCGTCCGCCGCCAGTTGGAGGCTGATTTCGGTATTGATTTATCCCACCGCAAGGCATTCATTAGGGAACAGGTCGACTTGTTCCTCCAGACCGAGCACAACCAACCGCAACAGCAACAACAACAAGACGACGACGTACCGAAAGACGAGGGAGAGGAAGAAGAGGAAGATGCCCTTAATAATCCCGAGCAAAGTGAATCATCCGATTCCAAGGAAGAATCGGAAGAAGACGACGATAACGACGAAGAGGAACGAGATAAACCTAAGCATGCCAAAAATGCCAAGAAGAATAAAGGACGATCTAACAAGTTAGGTGATGAGGTAGCAAAGAAAAGAGGTGGTGGATTTTGCAAATTGTGTAGCCTGTCTCCACAACTTCAGGAATTCATGGGTGCTCCAGAAATGGCCAGGACTGAGGTTGTTAAGCAAATATGGGCCTATATTAGGGAGAGAAATTTGCAAGACCCAAATAATAGACGGAATATAATTTGCGATGATAGAATGCGGGCCCTTTTTAATGTCAACTCCATCAACATGTTCCAAATGAATAAAGCATTGTCGAAGCATATCTGGCCATTGGATTCCGATGATGTTGTCCAGGTGAAGTCCACACCAAAGGAGAAGAAGCATAAGAAGCAAGAGAGAGATGATGATTCGGATGAGCCAAAAAGAAAGGAAAAACGGCAGAAGGGAGCAGGGAAATCAGGTTTTCTTGCCCCTCTTCAGCTATCAGATGCCCTTGTAAACTTCCTCGGTACCGGAGAAAGTGAGTTATCAAGAACTGATGTTATAAAAAGAATGTGGGATTACATTAAAGGAAACAACCTTCAGGATCCTTCTAACAAGAGGCAAATAATATGTGACGAGAAGCTGAAAGAACTCTTTGACGTCGACTCCTTCAATGGCTTCACAGTTACAAAACTGCTGGCACCACATTTTATAAAGACACAGCAGTGA 1035 0.4541 MVSESELIGRLREFLRSSDLNTTTTATVRRQLEADFGIDLSHRKAFIREQVDLFLQTEHNQPQQQQQQDDDVPKDEGEEEEEDALNNPEQSESSDSKEESEEDDDNDEEERDKPKHAKNAKKNKGRSNKLGDEVAKKRGGGFCKLCSLSPQLQEFMGAPEMARTEVVKQIWAYIRERNLQDPNNRRNIICDDRMRALFNVNSINMFQMNKALSKHIWPLDSDDVVQVKSTPKEKKHKKQERDDDSDEPKRKEKRQKGAGKSGFLAPLQLSDALVNFLGTGESELSRTDVIKRMWDYIKGNNLQDPSNKRQIICDEKLKELFDVDSFNGFTVTKLLAPHFIKTQQ 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02847 344 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 6 221 - -
Vimu7g02847 344 FunFam Upstream activation factor subunit 136 224 - -
Vimu7g02847 344 MobiDBLite consensus disorder prediction 58 134 - -
Vimu7g02847 344 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 1 56 IPR014876 -
Vimu7g02847 344 CDD SWIB-MDM2_like 146 216 - -
Vimu7g02847 344 Gene3D - 1 59 - -
Vimu7g02847 344 FunFam Upstream activation factor subunit 253 344 - -
Vimu7g02847 344 SUPERFAMILY DEK C-terminal domain 3 56 - -
Vimu7g02847 344 Gene3D SWIB/MDM2 domain 136 224 IPR036885 -
Vimu7g02847 344 Pfam DEK C terminal domain 2 55 IPR014876 -
Vimu7g02847 344 Gene3D SWIB/MDM2 domain 257 344 IPR036885 -
Vimu7g02847 344 SUPERFAMILY SWIB/MDM2 domain 138 220 IPR036885 -
Vimu7g02847 344 ProSiteProfiles SWIB/MDM2 domain profile. 262 341 IPR003121 -
Vimu7g02847 344 SUPERFAMILY SWIB/MDM2 domain 260 344 IPR036885 -
Vimu7g02847 344 MobiDBLite consensus disorder prediction 227 260 - -
Vimu7g02847 344 CDD SWIB-MDM2_like 267 339 - -
Vimu7g02847 344 SMART swib_2 263 344 IPR019835 -
Vimu7g02847 344 SMART swib_2 142 221 IPR019835 -
Vimu7g02847 344 MobiDBLite consensus disorder prediction 227 258 - -
Vimu7g02847 344 MobiDBLite consensus disorder prediction 72 88 - -
Vimu7g02847 344 Pfam SWIB/MDM2 domain 145 216 IPR003121 -
Vimu7g02847 344 Pfam SWIB/MDM2 domain 266 339 IPR003121 -
Vimu7g02847 344 ProSiteProfiles SWIB/MDM2 domain profile. 141 218 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02847 Vimu-Chr7 24075643 24079993 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Vimu7g02847 SWIB 2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02847 K15223 - gmx:100786835 556.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02847 7 24075643 24079993 Vimu7g02847 7 24075643 24079993 ECH