Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02682 ATGGTTGATGCTTTTCGGACACATATAATGCAAACAAAAGAACTTGGCACTTGTCCTGTGAGGCAGATTGGTGGTTGCTCTTTCTTTTACATGAGGATCAGCAATGTTTACATCGTGATTGTTGTCAGCAGCAATGCTAATGTAGCTTGCGCTTTCAAGTTTGTTGTTGAGGCAGTTGCACTATTTAAATCATATTTTGGCGGTGCCTTTGATGAAGACGCAATTCGAAATAATTTTGTACTTATTTATGAGCTCCTAGATGAAATCATGGATTTTGGTTATCCTCAAAATCTTTCTCCGGAAATCTTAAAGCTTTATATTACTCAGGAAGGAGTGCGTTCCCCATTTTCATCCAAGCCTGTAGATAGACCTGTCCCAAATGCAACTTTACAAGTTACTGGTGCTGTTGGTTGGCGGAGAGAAGGCCTTGTCTTCTTGGATATTGTGGAGAGCGTGAATCTTCTTATGTCTTCGAAGGGTGTTGTTCTACGCTGTGATGTTACGGGAAAGATTCTTATGAAGTGCTTTCTTTCTGGAATGCCTGATTTGAAGTTGGGTTTGAATGACAAGATTGGCCTAGAGAAAGAGTCAGAAATTAAATCTCGTCCTACTAAAAGTGGTAAAACTATTGAGCTTGATGATGTAACTTTCCACCAATGTGTAAATCTGACAAGGTTCAACTCAGAGAAGACAGTTAGTTTTGTGCCACCTGATGGTGAATTTGAACTAATGAAATATCGTATCACCGAGGGTGTTAATCTTCCCTTCAAAGTATTGCCCACCATCAAGGAACTTGGTCGAACAAGGATGGAAGTAAATGTTAAGGTAAAGAGTGTCTTTGGTGCAAAGATGTTTGCACTAGGGGTTGTTGTCAAAATTCCTGTGCCGAAACAAACAGCAAAAACGAGTTTCACAGTCACTTCTGGTCGAGCAAAATATAATGCAGCTATTGATTGTTTGGTTTGGAAACTAAGAAAATTTCCTGGGCAAACTGAGCCGACATTGAGTGCAGAAGTTGAACTTATTTCCACGATGACAGAAAAGAAATCTGGGACTAGACCGCCAATTCAGATGGAGTTTCAGGTTCCCATGTTCACGGCATCTGGTTTACGTGTCCGTTTTCTAAAGGTGTGGGAAAAGAGTGGATACAACACTGTTGAGTGGGTTCGGTATATTACGAAAGCAGGATCTTACGAGGCATTGATCTATACTTGTAAGTATACCATGATTCGTTGCTTCAAGGGAAGAAGTCATCTGATTGCTGGATTTCTAGGGATTGGAAACCACGATCACGATTCCAAGGATGCCGCCGCCGATGAGCACGATGTCCATCCTGGTACGACACCGTATCGAGTCAGAGAAACCGGTCGTCCTCGTAAAGGCTTTAGCGTCCCTGCCAAGGTCGTCGTCGATCGCCACCATCTCCCACCCGTTCTCACTCCCTCTACGTCTGGCGACGGCGGACTTCAGGGTCTGGGTTGGTATGCTAAGCATCTTACGATGGACGAAGATGGAGATGTGGCAGATGAATTCCTTGAAGAGGTATTGTCAGTGACGCCAGAAGGACTTGGAGAAGATCATCATAAAACACAAACAAGGTTTAAATCGAAGAAGGGGACCAAGGAAGTCAGAGTGAACAAACAGATCCTATTAGATGGGAAAATTATTCTTCATTGTGTGGAACACCAGGGCAGATTGTAG 1701 0.4292 MVDAFRTHIMQTKELGTCPVRQIGGCSFFYMRISNVYIVIVVSSNANVACAFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPVDRPVPNATLQVTGAVGWRREGLVFLDIVESVNLLMSSKGVVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESEIKSRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFKVLPTIKELGRTRMEVNVKVKSVFGAKMFALGVVVKIPVPKQTAKTSFTVTSGRAKYNAAIDCLVWKLRKFPGQTEPTLSAEVELISTMTEKKSGTRPPIQMEFQVPMFTASGLRVRFLKVWEKSGYNTVEWVRYITKAGSYEALIYTCKYTMIRCFKGRSHLIAGFLGIGNHDHDSKDAAADEHDVHPGTTPYRVRETGRPRKGFSVPAKVVVDRHHLPPVLTPSTSGDGGLQGLGWYAKHLTMDEDGDVADEFLEEVLSVTPEGLGEDHHKTQTRFKSKKGTKEVRVNKQILLDGKIILHCVEHQGRL 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02682 566 FunFam AP-2 complex subunit mu, putative 1 114 - -
Vimu7g02682 566 Gene3D - 1 115 - -
Vimu7g02682 566 SUPERFAMILY SNARE-like 3 112 IPR011012 -
Vimu7g02682 566 Gene3D Mu homology domain, subdomain B 254 399 - -
Vimu7g02682 566 PRINTS Clathrin coat assembly protein signature 72 99 IPR001392 GO:0006886|GO:0016192|GO:0030131
Vimu7g02682 566 PRINTS Clathrin coat assembly protein signature 281 296 IPR001392 GO:0006886|GO:0016192|GO:0030131
Vimu7g02682 566 PRINTS Clathrin coat assembly protein signature 132 160 IPR001392 GO:0006886|GO:0016192|GO:0030131
Vimu7g02682 566 PRINTS Clathrin coat assembly protein signature 212 239 IPR001392 GO:0006886|GO:0016192|GO:0030131
Vimu7g02682 566 PRINTS Clathrin coat assembly protein signature 321 332 IPR001392 GO:0006886|GO:0016192|GO:0030131
Vimu7g02682 566 CDD AP-2_Mu2_Cterm 144 399 IPR043512 -
Vimu7g02682 566 ProSiteProfiles Mu homology domain (MHD) profile. 141 401 IPR028565 -
Vimu7g02682 566 PANTHER AP COMPLEX SUBUNIT MU 2 400 - -
Vimu7g02682 566 Gene3D Mu homology domain, subdomain B 144 397 - -
Vimu7g02682 566 FunFam AP-2 complex subunit mu 254 364 - -
Vimu7g02682 566 CDD AP2_Mu_N 1 114 IPR043532 -
Vimu7g02682 566 Pfam Adaptor complexes medium subunit family 144 400 IPR028565 -
Vimu7g02682 566 MobiDBLite consensus disorder prediction 435 457 - -
Vimu7g02682 566 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 137 399 IPR036168 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02682 Vimu-Chr7 22560973 22569104 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02682 K11826 - gmx:100803452 756.518