Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02680 ATGAATTACAGTGATAATATTCTCTCCGATACTCCTCTGGATGATAACATGGGTTTCAGTGTGAAGAACACAAACAATCAAGCTAATTGCAAAGCACTTTGGATGAAAGAATCATCTTCCAATTCGGACAATGGATGGATGGTGCCTTATAAATACTATACTGTCAAGGGTTCCATTTCTGATTCAAACCCTAATGTTGACTCATCCAGTTGGGCTTTTTGTAATGAGGTTCAATTGAAAGACATTTCGTTGAAACACATGGAAATTATATACAACAACACTGTGTCAAAGCTTGTTGCTTTGGGGCACGATGAGGATATTGCTGTGAAAGCGATTTTGCTCAATGTTCATTGTTATGGCTCCAACGATTTGGCTACAGACCTGCTGCACAACACCTTGGCTTGTTTAGAAAAGGGGAGCATGGACATGTATGAGTTCAAGCCTGCGTTCTCTGATTTGAAGAAGCTTGAGGAGCACACTCTGATGAATCTTGTGTCTCTGTTGCAAGAAGTGAGGCTCGAGTTAGGCGTGGGTGATGCTATGTGGTGTCTCCTCATGAGTGATTACAATGTGTTAAAGGCAATTACCATCCATATTCCTGTTTTAAGCATGTTTCCTTCTCCTTTAACCGAGCTTGAGAACGAGGAACGGGGATTTAGAAACGAGGGAGGCTCAGATATTCCTTTGAAAGGGTTCTGTTGTGGTAAGGAGATGACTGGACGTTTACAGAGAGACATTGAATTCCCGAAAAAATTTGATCTTACTCCTGCCATGATTTGTTCGTTGAAAAGCAATGTTGTAGCGTTTGCTGATGGATACAAGGCCAACTCAAAACAGGTGCCGTCAAATGAAGTTAAATTTCCTGGGATTAGCACTGTTTCGAAATTGGACTCTTCATCTGCTTCTGTGGCTACAATCCTTGGTGATCTGCCTGGTGATTCTCACAATATGAATAACCAGGATGACTTGAAGTCTGTGCTGAGTAAATTTCATCATCTAAATATTGATGAGAACTTGGAGTTTGTGGCAGAAGACGAGAAGGATTCGGTGATAGTTACTCTAGTGCATCAAATAAAGGATCTTGAGAAACAGGTAAAGGAGCGGAAAGATTGGGCACATGAGAAGGCAATCCAAGCTGCAAGAAAGCTAAACAGCTATCTAATTGAGCTGAAAACATTCAGGATAGAAAGAGAGGAGAATCAAAGACTGAAGAAGGGGAAAGAGGCAAATGAGGAGCTTGAGGACCCTACCATGGTGAGACTCTTAGAACTGGAGGAGGCCTTGAGAAAGGTTTGTGGTCAAACGGATCTTGCAACTGCAGGAGTTGGGAAACTTGAGACGGAGAAAGCTGAAATCAAAGCAGAGTTAGAAGCTTGTAAATTAAGTGCAGCAGAGTATGTAGCAAGCTGCTTGCAAATTGCAAAAAGGGAGAAAAAGTGCTTAAAGAAGCTTCTGGCTTGGGAAAAACAGGAAGCGAAGATAAAACAGGATATTTCAGATGAAAAGCAGAAGATTTTGGAGATACAAGAAGAGTTGGCTCAGATTAAACAACGTGCAAAAGAAGCTGAGGTAATGAGGGGTGAAGAGTTAAAGGCTAAGGAGGAAGCCTTAGCACTGATTGAAGAGGAACGCCGTTCTATGGTAGCAGCAGAGGCTAATAGAAAAAGAAATCTTAAGGCTTTAAGCCTGAAGATGGAGATAGATTTCCAGCGTCGCAAAGATGATCTTTTAAGACTGGAGCAGGAGATTTCGCGTCTTAAAGCATCTGCACAGTCTGCTACTTTGCCTACATGTGAGTCTGAGGAAGCAGAGCCCCACACAGAGATAATTGCTAAGCTTCTGCAAGAATTAGATAACGTGCCGGATTTTTTTGGAAAAGAAGCCACCGGTAATACTTATAGAGAATGCGTTATATGTGGAAAAGATGAGGTTTCCGTAGTTTTCTTGCCATGTGCACACCAAGTTATGTGTGCCAGTTGCAGTGAAGAGTATGGGAGAAATGGCAAAGCTGTTTGTCCATGCTGCTGGGTTCCAATCGAACAGAGAATTCGTACATTTGGGGGAAGTTCGTAG 2073 0.4211 MNYSDNILSDTPLDDNMGFSVKNTNNQANCKALWMKESSSNSDNGWMVPYKYYTVKGSISDSNPNVDSSSWAFCNEVQLKDISLKHMEIIYNNTVSKLVALGHDEDIAVKAILLNVHCYGSNDLATDLLHNTLACLEKGSMDMYEFKPAFSDLKKLEEHTLMNLVSLLQEVRLELGVGDAMWCLLMSDYNVLKAITIHIPVLSMFPSPLTELENEERGFRNEGGSDIPLKGFCCGKEMTGRLQRDIEFPKKFDLTPAMICSLKSNVVAFADGYKANSKQVPSNEVKFPGISTVSKLDSSSASVATILGDLPGDSHNMNNQDDLKSVLSKFHHLNIDENLEFVAEDEKDSVIVTLVHQIKDLEKQVKERKDWAHEKAIQAARKLNSYLIELKTFRIEREENQRLKKGKEANEELEDPTMVRLLELEEALRKVCGQTDLATAGVGKLETEKAEIKAELEACKLSAAEYVASCLQIAKREKKCLKKLLAWEKQEAKIKQDISDEKQKILEIQEELAQIKQRAKEAEVMRGEELKAKEEALALIEEERRSMVAAEANRKRNLKALSLKMEIDFQRRKDDLLRLEQEISRLKASAQSATLPTCESEEAEPHTEIIAKLLQELDNVPDFFGKEATGNTYRECVICGKDEVSVVFLPCAHQVMCASCSEEYGRNGKAVCPCCWVPIEQRIRTFGGSS 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02680 690 Pfam Zinc finger, C3HC4 type (RING finger) 634 681 - -
Vimu7g02680 690 SUPERFAMILY RING/U-box 611 682 - -
Vimu7g02680 690 PANTHER OS05G0141500 PROTEIN 35 684 IPR046934 -
Vimu7g02680 690 Coils Coil 442 462 - -
Vimu7g02680 690 Coils Coil 491 525 - -
Vimu7g02680 690 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 626 687 IPR013083 -
Vimu7g02680 690 Pfam Family of unknown function (DUF6592) 86 196 IPR046527 -
Vimu7g02680 690 CDD RING-HC_MIP1-like 634 684 - -
Vimu7g02680 690 Coils Coil 533 553 - -
Vimu7g02680 690 Coils Coil 569 589 - -
Vimu7g02680 690 ProSiteProfiles Zinc finger RING-type profile. 636 675 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02680 Vimu-Chr7 22548871 22552018 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02680 - - vra:106777712 1288.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02680 7 22548871 22552018 Vimu7g02680 7 22548871 22552018 PCT