Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02656 ATGAGTTCTCTCACCGGACTTGCTCCACTTGAAGCTGTGCTCTTTGATATAGATGGAACACTATGTGACTCTGATCCACTCCACTATGAAGCTTTGCGTGAAATGCTCTTAAAGATTGGTTTTAATGGAGGTGTTCCTATAACGGAGGAATTTTTTGTTGAAAAATTTTCTGGCAAGAACAAAGTTGATGCTGCCTCAGTTGCCTTTCCTGATGATCCGGAACAAGGTTTGAAGTTTGTAGAAGATAAGGAAGCCATGTTCCGGAGATTGGCGAGACAGCAACTCAAGCCAGTGAAAGGCCTTGATAAAGTGAGGACATGGGTTGAAAACCGTGGTCTCAAGAGAGCTGCAGTTACCAATTCTCCAAGAGAAAATGCAGAACTCATGATCTCAAAACTTGGTCTCTTGGACTTCTTTGATGTTCTTATTATTGGTGATGAATGTGAACGTGGTAAACCTCATCCCGACCCCTACTTGAAAGCTCTTGAAGTTCTGAATTCATCGAAGGATCATGCATTTGTATTTGAGGATTCTTTTTCAGGGATTATAGCTGGAGTGACAGCTGGGATGCCTGTTATTGGCATAACTACACGAAACCCAGAGGATTTACTAATGAAAGCAAAGCCTGCTTTTCTGATTAATGATTACGAGGATCCAAAATTGTGGGCAGCTTTAGAAGAATTTGACAAGCCTGATGCTGAAAAGTTGGAATTTCTGGATAAAAAAATTTAG 732 0.4098 MSSLTGLAPLEAVLFDIDGTLCDSDPLHYEALREMLLKIGFNGGVPITEEFFVEKFSGKNKVDAASVAFPDDPEQGLKFVEDKEAMFRRLARQQLKPVKGLDKVRTWVENRGLKRAAVTNSPRENAELMISKLGLLDFFDVLIIGDECERGKPHPDPYLKALEVLNSSKDHAFVFEDSFSGIIAGVTAGMPVIGITTRNPEDLLMKAKPAFLINDYEDPKLWAALEEFDKPDAEKLEFLDKKI 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02656 243 NCBIfam HAD-IA family hydrolase 75 195 IPR006439 -
Vimu7g02656 243 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 10 21 IPR006439 -
Vimu7g02656 243 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 139 155 IPR006439 -
Vimu7g02656 243 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 108 121 IPR006439 -
Vimu7g02656 243 PANTHER 6-PHOSPHOGLUCONATE PHOSPHATASE 11 229 - -
Vimu7g02656 243 Gene3D - 11 219 IPR023214 -
Vimu7g02656 243 SFLD C1.5.6: HAD, Beta-PGM, Phosphatase Like 10 218 - -
Vimu7g02656 243 Gene3D Putative phosphatase; domain 2 25 93 IPR023198 -
Vimu7g02656 243 CDD HAD_BPGM-like 12 197 - -
Vimu7g02656 243 Pfam Haloacid dehalogenase-like hydrolase 13 195 IPR041492 -
Vimu7g02656 243 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 10 218 - -
Vimu7g02656 243 SUPERFAMILY HAD-like 9 227 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02656 Vimu-Chr7 22400230 22401268 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02656 - - vra:106773023 437.958