Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02649 ATGGACTCGCAACAGAGCAATCTATTCGACACCGCTTCGCAGCCCGACACCGGCAACGACGCCTACACCTTTCTTGAATTTAACACACAGGGCGAGGATTTCGACTACCCTGAATTTCGCGACCCGATTAGGTCGCCGGTAGCATGGCCAACTCCGTCCGATTCGCTAGCGGACACGTCGGACCGCGGCGCCGTTGGGGGACCTGGCTCCGATCACCAGTCCGATGCCTCGCCTGTCTCCGCGGCTCCTGGAAGCGCTACCAAGGGCGGCCGGTCGGGGAACGGCGGTGGGCACAGCAGCCAGATGGTGGATGCGCTTGCCGCGGGGATGAGCGGGTTGAATTTTGAGGACACTGGGGATGATGATAACTACGAGTATGGTAAAGGAGATTTCACTGAACACGCTTGCCGTTATTGCGGGGTTTCCAATCCCGCTTGTGTTGTGAGGTGCAATGTACCTTCGTGTCGTAAGTGGTTCTGTAATTCACGGGGGAACACTTCTGGATCACATATTGTCAATCACCTGGTTCGGGCTAAACACAAGGAAGTCTGTCTACACAAAGATAGTCCGTTGGGAGAAACAATTCTTGAATGCTACAATTGTGGATGTCGCAATGTTTTTCTCCTTGGATTTATTTCTGCAAAGACGGAAAGTGTAGTGGTCTTACTATGTCGTGAACCTTGCTTGAGTGTTAATGCCTTGAAGGACATGAATTGGGACCTTAGTCAATGGTGTCCCTTGATTGATGATAGGTGTTTCTTGCAGTGGCTTGTCAAGATCCCATCTGAACAGGAGCAGTTAAGAGCTCGCCAAATAAGTGCACAACAAATAAATAAGGTGGAGGAATTGTGGAAGACAAATCCTGATGCTTCTTTTGAAGACCTTGAGAAGCCTGGCGTAGATGATGAACCTCAGTCTGTGGCTTTGAAATATGAAGATGCATATCAGTATCAAAATGTATTTGCACCTCTTATTAAGCTTGAAGCTGATTATGACAAGATGATGAAAGAATCACAAAGTAAGGACAATGTCACTATTCGATGGGATATTGGTCTTAATAAGAAGCGTGTTGCCTATTTTGTATTTCCAAAGGAGGATAATGAGTTGCGGCTTGTACCTGGTGATGAGTTACGACTCCGATATTCTGGTGATGCTGCTCATCCTGCATGGCAGTCAGTGGGTCATGTGATTAAGCTAACTGCACAAGAGGAGGTTGCATTGGAGCTCCGTGCTAGTCAGGGTGTTCCTGTTGATGTTAACCATGGGTATATTTATCATCACTTACTGGGTCATGAAGTTGAGGTTCAGATGGTGCGAAATGCTTTGCCTCGTCGCTTTGGTGCACCTGGCCTTCCTGAGCTGAATGCATCTCAGGTTTTTGCTGTCAAGAGTGTTCTTCAGAGGCCTATAAGTTTGATTCAAGGACCACCTGGAACTGGTAAGACTGTAACTTCTGCAGCACTTGTATATCACATGGCCAAGCAAGGTCAGGGACAGGTTTTGGTTTGTGCACCCAGTAATGTAGCTGTGGACCAGCTAGCTGAAAAGATAAGTGCTACTGGATTAAAGGTTGTGAGGCTTTGCGCAAAATCAAGGGAAGCTGTCAGTTCTCCTGTTGAGCATTTAACTCTCCACTATCAGGTTCGACATCTTGACACATCTGACAAGAGTGAACTTCATAAGTTGCAACAGCTGAAGGATGAGCAAGGTGAACTTTCCAGCAGCGATGAGAAAAAATACAAAGCTCTCAAGCGAGCAACTGAGAGGGAGATTTCTCAGAGTGCAGATGTGATCTGCTGTACATGTGTTGGTGCTGGAGATCCTCGGCTAGCAAATTTTAGGTTCCGCCAGGTTCTTATTGATGAGTCTACTCAAGCAACTGAACCTGAGTGCCTCATACCTTTGGTCCTAGGAGCAAAGCAGGTTGTTCTTGTTGGCGATCATTGTCAGCTTGGTCCAGTTATTATGTGCAAGAAAGCAGCTCGTGCTGGATTAGCTCAGTCACTTTTTGAGCGACTTGTTCTGCTTGGTGTTAAGCCAATTAGGTTGCAGGTTCAGTACCGAATGCATCCATGTCTTTCAGAATTTCCCTCAAACAGCTTCTATGAAGGCACCCTGCAAAATGGAGTCACTGTTAATGAGAGGCAATCATCAGGAATCGATTTTCCATGGCCAGTTCCAAACCGTCCTATGTTTTTCTATGTTCAGATGGGACAAGAAGAGATAAGTGCTAGTGGAACATCTTATTTAAATAGGACTGAGGCTGCAAATGTTGAAAAGATTGTAACTACTTTCTTAAAAAGTGGTGTGGTTCCAAGTCAGATTGGTGTGATAACACCTTATGAAGGGCAAAGAGCTTATATTGTGAACTATATGTCAAGAAATGGTGCTCTCAGGCAGCAGCTTTACAAGGAGATTGAGGTTGCTAGTGTTGATTCTTTTCAAGGAAGGGAAAAAGATTACATAATTCTTTCTTGTGTTAGAAGTAATGAACATCAGGGCATTGGGTTCCTAAATGATCCCAGGCGGCTCAATGTTGCCTTGACTCGAGCAAGATATGGTATTGTTATTTTGGGTAACCCTAAAGTTTTGAGCAAGCAGCCTCTGTGGAATAGTTTATTGACTCACTACAAGGAACATGAGTGCTTAGTTGAAGGGCCTTTAAATAATTTGAAGCAGAGTATGGTTCAGTTTCAGAAACCCAAAAAGGTAGGTGCTCAAGGATGGTATGGTGTTGATTATTTGCTTTGTGCACTTAGCAAGGGTCTGTTAGTGCATTCAGCTGGGATTTATAATGAACGAAGGCTTTTTTACGGAGGTGGGCCTGGAATTGCGGCTAATGATAATTTTGGTTCTGTTGGATCTGGAGCTGGAACAAGTTCAGATCGGAGGAGTAGTCGAGGAAGGGGATCGTATATACCTCCTGGTCCACCAAATGGAACTCATAAGCCTGGAGTGCATCCTGCTGGATATCCTGTGCCAAGAGTTCCCTTGCCTCCCTTCCATGGTGGTCCCCAATCTCAACCATATGCCATTCCTTCACGTGGGGCTGTTCATGGACCTGTTGGGGCAGTTCCTCATGTTCCATCTCCTGGGAGTCGAGGCTTTGGGGCTGGTAGAGGTAATTCTGGTGCTCCAATTGGCAATCATCTTCCACACCAACAAGGCACCCAACAACCGATTGGGAATATTGGATCTACCTTTAACTTCCCTACTCTAGAGAATCCTAACAGCCAGCCATCTGTTGGTGGTCCTTTATCTCAACCTGGGTTTGCAAACAATATGCCAGTTCAAGGGGCTGGCCAGTCATTTCGAGACCAATTTTCTATGCCTGGAATGTCGCAGGACTTTTTGGGCGATGACTTCAAAAGCCAGGGATCTCATGTTCCTTACAATGTCACCGACTTCTCTACTCAGGCTTCTCAAAGTGGATATGCTGTTGATTTTTCTACACAAGGAGCACAAGGTGGATTCCCTGGAAATTTTCTTAACCAGAATTCTCAAGCTGGCTATTCTCGTTTTGGTTCTGGAAACGACTTTATGTCCCAGGACTACATGGGCCATGGTTCTCAAGGTCTTTTTACTCAGGTGGGATTCAATGACCCGTTGCAAGATGATTCAACTCAAAGCCATTTCGGTGTGGCTAATGCCAACCCTCTTCAGTCCCAGATGAATTCTCTCTACTCCCAACCATTTGCTCACTACAACACACAGCCGCTTAACATGCAGGCTTCGCAACAGCAGTCTCAGGCTCAGAACTCCCAAAATCAGAAAATCCACTATAACGGTTGA 3792 0.4602 MDSQQSNLFDTASQPDTGNDAYTFLEFNTQGEDFDYPEFRDPIRSPVAWPTPSDSLADTSDRGAVGGPGSDHQSDASPVSAAPGSATKGGRSGNGGGHSSQMVDALAAGMSGLNFEDTGDDDNYEYGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDASFEDLEKPGVDDEPQSVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDVNHGYIYHHLLGHEVEVQMVRNALPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAALVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSDKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPCLSEFPSNSFYEGTLQNGVTVNERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLKSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKVGAQGWYGVDYLLCALSKGLLVHSAGIYNERRLFYGGGPGIAANDNFGSVGSGAGTSSDRRSSRGRGSYIPPGPPNGTHKPGVHPAGYPVPRVPLPPFHGGPQSQPYAIPSRGAVHGPVGAVPHVPSPGSRGFGAGRGNSGAPIGNHLPHQQGTQQPIGNIGSTFNFPTLENPNSQPSVGGPLSQPGFANNMPVQGAGQSFRDQFSMPGMSQDFLGDDFKSQGSHVPYNVTDFSTQASQSGYAVDFSTQGAQGGFPGNFLNQNSQAGYSRFGSGNDFMSQDYMGHGSQGLFTQVGFNDPLQDDSTQSHFGVANANPLQSQMNSLYSQPFAHYNTQPLNMQASQQQSQAQNSQNQKIHYNG 1263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02649 1263 MobiDBLite consensus disorder prediction 1033 1063 - -
Vimu7g02649 1263 MobiDBLite consensus disorder prediction 990 1006 - -
Vimu7g02649 1263 Pfam RNA helicase UPF1, 1B domain 339 423 IPR040812 -
Vimu7g02649 1263 Pfam AAA domain 666 861 IPR041679 -
Vimu7g02649 1263 CDD 1B_UPF1-like 340 423 IPR040812 -
Vimu7g02649 1263 CDD DEXXQc_UPF1 453 688 - -
Vimu7g02649 1263 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 462 594 IPR014001 -
Vimu7g02649 1263 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 450 885 IPR027417 -
Vimu7g02649 1263 CDD SF1_C_Upf1 689 878 IPR047187 -
Vimu7g02649 1263 Pfam Type III restriction enzyme, res subunit 459 521 IPR006935 GO:0003677|GO:0005524|GO:0016787
Vimu7g02649 1263 Gene3D - 340 423 - -
Vimu7g02649 1263 MobiDBLite consensus disorder prediction 1 101 - -
Vimu7g02649 1263 MobiDBLite consensus disorder prediction 952 967 - -
Vimu7g02649 1263 FunFam Regulator of nonsense transcripts 1 688 899 - -
Vimu7g02649 1263 Gene3D - 688 899 IPR027417 -
Vimu7g02649 1263 MobiDBLite consensus disorder prediction 949 1014 - -
Vimu7g02649 1263 Gene3D - 424 687 IPR027417 -
Vimu7g02649 1263 PANTHER DNA2/NAM7 HELICASE FAMILY 249 1111 IPR045055 -
Vimu7g02649 1263 Gene3D - 539 591 - -
Vimu7g02649 1263 FunFam regulator of nonsense transcripts 1 homolog 340 428 - -
Vimu7g02649 1263 MobiDBLite consensus disorder prediction 1 26 - -
Vimu7g02649 1263 CDD ZBD_UPF1-like 135 257 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Vimu7g02649 1263 MobiDBLite consensus disorder prediction 1242 1263 - -
Vimu7g02649 1263 Pfam AAA domain 553 656 IPR041677 GO:0004386
Vimu7g02649 1263 Pfam RNA helicase (UPF2 interacting domain) 134 287 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Vimu7g02649 1263 MobiDBLite consensus disorder prediction 1048 1063 - -
Vimu7g02649 1263 ProSiteProfiles Upf1 cysteine-histidine-rich (CH-rich) domain profile. 128 287 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02649 Vimu-Chr7 22348740 22359267 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02649 K14326 - gmx:100795594 2380.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02649 7 22348740 22359267 Vimu7g02649 7 22348740 22359267 ECH