Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02642 ATGGCTGTTCAAGCTCAATACCCCTCCAATGTACTCTTTCTAAACTGCAGCAAAAGCGGAAAAGAACCACCACTTGACTATTCTTTGCCAGGGGAACTCCTTCATCATAATCAATCTTCTATGTTATTCAACAACGGAGGTAGTAATTCTCGAAAGAGAGGAAGAGAAACAGCAGCAGCTAACCTTGTCAATTCCTTCTCTTTACAATCACAATCACAATCTCCACAGTTTGTAGACCTCACTCAACTTCATAATCAAAATGTAGTCTCTACAGGGTTGGGCTTATCCTTCGGTGACCAGCAATTACATCAGCAGCAACAGCAAAATCATGGCTGTCACTCCTCTTCTTTCCTATCTCTATTATCCGATGGTTTGACCTTGCAAATCAAACAACAGCACGATGAAATCGACCGGTTCCTTCAAGTCCAGGGCGAGCAATTGCGGCGGGCATTGACTGAGAAAAGAAAGAGGCATTATCGGGCTCTGTTAAGAGGAGCGGAGCAATCGATTTTGCGGCGACTGAGGGAAAAGGAGACAGAGGTGGAGAAAGCGACAAGGCGCAACGCAGAGCTGGAGGCACGCGCCGCGCAGCTTGGCGTGGAGACGCAGCTTTGGCAGGCCAAGGCAAAGGCGCAGGAAGCAACTGCGGCATCCTTGCAGGCACAGCTGCAGCAGGCCATGATGAGCTGTGAGGACGGCGGGGGAGGGCTGTCATGCGCCGGAGGCGAGGCGGAGGATGCTGAGTCAGCATGTGTTGACCCGGAGCGAGCTGGTCCGAAATGCAGAGGGTGCGCAAAACGGGTGGCTTGTGTGGTGGTTTTGCCGTGTCGACACCTATGCATCTGCGCTCAGTGCAACACGCATTTTCGGGCGTGTCCCGTTTGCCTCACAGTTAAAAATTCAACCGTTCAAGTCTATCTTTCTTAA 927 0.5081 MAVQAQYPSNVLFLNCSKSGKEPPLDYSLPGELLHHNQSSMLFNNGGSNSRKRGRETAAANLVNSFSLQSQSQSPQFVDLTQLHNQNVVSTGLGLSFGDQQLHQQQQQNHGCHSSSFLSLLSDGLTLQIKQQHDEIDRFLQVQGEQLRRALTEKRKRHYRALLRGAEQSILRRLREKETEVEKATRRNAELEARAAQLGVETQLWQAKAKAQEATAASLQAQLQQAMMSCEDGGGGLSCAGGEAEDAESACVDPERAGPKCRGCAKRVACVVVLPCRHLCICAQCNTHFRACPVCLTVKNSTVQVYLS 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02642 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 252 308 IPR013083 -
Vimu7g02642 308 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 243 307 - -
Vimu7g02642 308 Coils Coil 167 201 - -
Vimu7g02642 308 PIRSF SBP1_RNase_bind 1 308 IPR017066 -
Vimu7g02642 308 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 44 305 IPR017066 -
Vimu7g02642 308 Coils Coil 209 229 - -
Vimu7g02642 308 ProSiteProfiles Zinc finger RING-type profile. 261 295 IPR001841 -
Vimu7g02642 308 Pfam Zinc finger, C3HC4 type (RING finger) 260 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02642 Vimu-Chr7 22238613 22239797 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02642 K19042 - gmx:100797727 403.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02642 7 22238613 22239797 Vimu7g02642 7 22238613 22239797 ECH
Vimu7g02642 7 22238613 22239797 Vimu7g02642 7 22238613 22239797 PCT