LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu7g02639	ATGGCTCTAACACTTCGTTCTTCGGTTTCCCTCGTCAACCAGAAAGAAACCAGACTCCCAAAACCCAAAGAAGACGTTTACACAAAAGTTTCTTACCTCGGAAAAACGAAAGTAAACCAATCTTTCCGTCTCCGAACCAAGAGTTCCATGCAACAAACACATGTCACAGGAGACAACAACAGCAACAACTTCAACGCCCAAGTGACGATGAAAAACGAGAAAAGAGAGAAGCTTCACGCGCCGTTGGTTGGTCATAGTCATAATGATTCGATGAGAGTGCCGGTGTTTGTGATGCTGCCATTGGACACTGTAACAATGGGGGGGACTTTGAATAAGCCGAGAGCGATGAATGCTAGTTTGATGGCTTTGAAGAGTGCAGGAGTTGAAGGAGTGATGGTGGATGCTTGGTGGGGTTTGGTGGAAAGAGAAGAACCCTTGAAGTATAACTGGGAAGGCTATGGTGAACTTGTGCAAATGGTTCAAAGGCATGGCTTGAAGCTTCAGGTTGTCATGTCTTTCCATCAATGTGGTGGAAATGTCGGAGACTCCTGCAGTATTCCTCTGCCTCGGTGGGTGCTGGAAGAAATCAGCAAGAACCCTGAACTGGTTTACACAGACAGATCAGGGAGGAGGAATCCTGAATACATATCCTTGGGCTGTGATTCAATGCCTGTTCTTCGGGGAAGGACACCCATTCAAGTGTACTCTGATTACATGAGGAGCTTCCGTGACAGATTCAGAGACTATTTGGGCAGTGTTATCATTGAAATTCAAGTGGGGATGGGTCCTTGTGGGGAGCTAAGATATCCATCTTATCCTGAAAGCAATGGAACTTGGAGGTTTCCTGGCATTGGAGAATTCCAGTGCTACGACAAGTATATGAGAGCTTCCTTGGAAGCATCAGCTGAGGCCATTGGGAAGAAAGATTGGGGAAGAAGTGGACCCCATGATTCTGGCCAGTACAACAATTTTCCTGAAGAAACTGGATTTTTCCGTAGGGAAGGAACATGGAACTCAGAATACGGACAATTCTTCCTTGATTGGTACTCCACCAAGCTTGTTGAACACGGTGAGAGAATCCTTGCATCAGCCAAAGGCATATTCAACTCGCGTGGGGTGAAATTATCTGCCAAAGTTGCTGGAATTCATTGGCACTACAAGGCAAGGTCACATGCAGCAGAACTAACAGCAGGCTACTACAACACTCGGTTTCATGATGGGTACCTAGCAATAGCAGAAATGCTGGCAAAGCAGGGTGCAGTGTTCAACTTCACCTGCATGGAAATGAGGGACAAAGAGCAATCCGAGCATGCTAGTAGCTCCCCAGAGGGCTTGGTTCATCAAGTGAAGATGGCAACCAGAAGAGCAGGAGCAGAACTTGCCGGGGAGAATGCTCTTGAGAGATATGATGCAGCTGCATTTTCTCAAGTTTTGGCAACAAGTGACTCTGGTTCTGGATTGTCTGCATTTACTTTTCTCAGAATGAACAAGAACTTGTTCGAGGGAGAAAATTGGAGGCACTTTGTGGAGTTTGTGAAAAGCATGTCAGAGGGTGGTAGGAGACAAAGCCTTCCACTTTCTGATTCCTGCGGCACTCATCTTTACGTTGGACACATCACAGGATTTAAGAAGCAGCAAGAGCATGCTCAAGATGTTGCTCTCGTCTGA	1668	0.464	MALTLRSSVSLVNQKETRLPKPKEDVYTKVSYLGKTKVNQSFRLRTKSSMQQTHVTGDNNSNNFNAQVTMKNEKREKLHAPLVGHSHNDSMRVPVFVMLPLDTVTMGGTLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEREEPLKYNWEGYGELVQMVQRHGLKLQVVMSFHQCGGNVGDSCSIPLPRWVLEEISKNPELVYTDRSGRRNPEYISLGCDSMPVLRGRTPIQVYSDYMRSFRDRFRDYLGSVIIEIQVGMGPCGELRYPSYPESNGTWRFPGIGEFQCYDKYMRASLEASAEAIGKKDWGRSGPHDSGQYNNFPEETGFFRREGTWNSEYGQFFLDWYSTKLVEHGERILASAKGIFNSRGVKLSAKVAGIHWHYKARSHAAELTAGYYNTRFHDGYLAIAEMLAKQGAVFNFTCMEMRDKEQSEHASSSPEGLVHQVKMATRRAGAELAGENALERYDAAAFSQVLATSDSGSGLSAFTFLRMNKNLFEGENWRHFVEFVKSMSEGGRRQSLPLSDSCGTHLYVGHITGFKKQQEHAQDVALV	555

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu7g02639	555	PANTHER	BETA-AMYLASE 1, CHLOROPLASTIC	48	520	IPR001554	GO:0000272\|GO:0016161
	Vimu7g02639	555	Pfam	Glycosyl hydrolase family 14	96	511	IPR001554	GO:0000272\|GO:0016161
	Vimu7g02639	555	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	148	166	IPR001554	GO:0000272\|GO:0016161
	Vimu7g02639	555	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	445	467	IPR001554	GO:0000272\|GO:0016161
	Vimu7g02639	555	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	170	191	IPR001554	GO:0000272\|GO:0016161
	Vimu7g02639	555	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	390	401	IPR001554	GO:0000272\|GO:0016161
	Vimu7g02639	555	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	127	141	IPR001554	GO:0000272\|GO:0016161
	Vimu7g02639	555	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	337	356	IPR001554	GO:0000272\|GO:0016161
	Vimu7g02639	555	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	262	284	IPR001554	GO:0000272\|GO:0016161
	Vimu7g02639	555	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	408	431	IPR001554	GO:0000272\|GO:0016161
	Vimu7g02639	555	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	373	389	IPR001554	GO:0000272\|GO:0016161
	Vimu7g02639	555	ProSitePatterns	Beta-amylase active site 1.	174	182	IPR018238	GO:0000272\|GO:0016161
	Vimu7g02639	555	SUPERFAMILY	(Trans)glycosidases	92	518	IPR017853	-
	Vimu7g02639	555	Gene3D	Glycosidases	84	539	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu7g02639	Vimu-Chr7	22227261	22229674	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu7g02639	1	555	Glycoside Hydrolase	AT4G17090	68.223	0.0	790

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu7g02639	K01177		-	gmx:100786079	979.163

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu7g02639	7	22227261	22229674	Vimu7g02639	7	22227261	22229674	ECH