Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02632 ATGGGTTGTTTCCACTCCAAAGTAAGGGAAATTCCCATGGAAGATCCGTTTGCTCTTGCGTCAGAGACAGCTTTTGGTCTGAGAATGAGAATAACTGTTCTTTTGCAGGAGGAATTTCAACTGGCAATTTTTAATAATAAGAAGAAGGAAAACCTCTTTACGAGTCGGATCTTTGATTTATTTGATGTCAAGAAGAAAGGAGTGATTGACTTTGGTGATTTCGTTAGAGCACTCAATGTTTTTCACCCATCTGCACCAATGGAAGTCAAAATAGAATTTTCGTTTAAGCTGTACGATTTAGATAACACGGGATTCATAGAGCGTCATGAGGTCAAGCAAATGATAAATGCACTTCTATGTGAAGCGGAAATTAAGTTATCAGAGGAAACGATAGAAACAATTATCAACAAGACTTTCATGGATGCTGACCCGAATCAAGATGGGAAAATAGACAAATATGAGTGGAAAAACTTCGTTTATGAAAATCCTTCATTGTTGAAAGTTATGACGTTACCCTACTTGAGGGACGTGACAACTGCTTTTCCAAGTTTTGTGTTTCATTCAAAGGTGGAGGATGAAATTGCAGAATGA 591 0.3756 MGCFHSKVREIPMEDPFALASETAFGLRMRITVLLQEEFQLAIFNNKKKENLFTSRIFDLFDVKKKGVIDFGDFVRALNVFHPSAPMEVKIEFSFKLYDLDNTGFIERHEVKQMINALLCEAEIKLSEETIETIINKTFMDADPNQDGKIDKYEWKNFVYENPSLLKVMTLPYLRDVTTAFPSFVFHSKVEDEIAE 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02632 196 FunFam calcineurin B-like protein 3 28 192 - -
Vimu7g02632 196 PANTHER CALCINEURIN B 34 192 IPR045198 GO:0005509|GO:0019722|GO:0019900
Vimu7g02632 196 SMART efh_1 90 118 IPR002048 GO:0005509
Vimu7g02632 196 SMART efh_1 53 81 IPR002048 GO:0005509
Vimu7g02632 196 SMART efh_1 134 162 IPR002048 GO:0005509
Vimu7g02632 196 ProSiteProfiles EF-hand calcium-binding domain profile. 130 165 IPR002048 GO:0005509
Vimu7g02632 196 SUPERFAMILY EF-hand 36 184 IPR011992 -
Vimu7g02632 196 CDD EFh 90 159 IPR002048 GO:0005509
Vimu7g02632 196 Pfam EF-hand domain pair 90 158 IPR002048 GO:0005509
Vimu7g02632 196 ProSitePatterns EF-hand calcium-binding domain. 99 111 IPR018247 -
Vimu7g02632 196 ProSiteProfiles EF-hand calcium-binding domain profile. 49 84 IPR002048 GO:0005509
Vimu7g02632 196 Gene3D - 24 193 - -
Vimu7g02632 196 ProSiteProfiles EF-hand calcium-binding domain profile. 86 121 IPR002048 GO:0005509
Vimu7g02632 196 ProSitePatterns EF-hand calcium-binding domain. 143 155 IPR018247 -
Vimu7g02632 196 PRINTS Recoverin family signature 57 78 - -
Vimu7g02632 196 PRINTS Recoverin family signature 150 170 - -
Vimu7g02632 196 PRINTS Recoverin family signature 104 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02632 Vimu-Chr7 22192278 22194855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02632 1 195 EF-hand Containing Proteins AT4G17615 62.441 4.72e-92 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02632 K06268 - gmx:100779020 318.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02632 7 22192278 22194855 Vimu7g02632 7 22192278 22194855 ECH
Vimu7g02632 7 22192278 22194855 Vimu7g02632 7 22192278 22194855 PCT