Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02607 ATGGCTTCTTCTGCTAAAAGGTGGCTTCCGCTCGAAGCAAACCCTGAAGTCATGAATCAGTTCCTTTGGGGACTTGGGCTTGGCGAGAACGAGGCAGAGTGCTGTGACGTTTATGGCTTAGATGAAGAGCTTCTGCAAATGGTTCCTAACCCCGTTCTTGCCGTGCTTTTTCTTTATCCCATAACCACCCAGAGTGAAGAAGAAAGGTTGCAGCAGGAAAAGGAAAAAAAGGTCTCATTACTCAGTGAACAGTACCGTAGTAAAGAATATAGCAGTAGAGTGTATTTTATGAAGCAAACTGTGGGTAATGCCTGTGGAACAATTGGACTGCTTCATGCTCTTGGCAACTTGACTTCGGAAGTCAAGTTGGGTGAGTTGCTTACTTGCCACTGGTTAATTCTCTCTGTTGAGGTTTTTAATGCACTGGATCATATTTACCAACCAGTGTTGCTTTTGCCAGTTGAGGGGTCTTTCTTTAATAACTTCTTTAAATCCACTGCAAGCATGGATCCACTGCAGCGTGCTAAATTTCTGGAGAATGACAGAGAAATGGAAGTTGCTCATTCAGTGGCAGCGACTGCTGGTGATACAGAGGCATCTGACAATGCTGATGCACATTTCATATGCTTTGTCTGTGTTGATGATGAACTTTATGAGCTTGATGGAAGAAAAACGTGGCCAATATCTCATGGTCCATGTTCATCGAGTACTTTGTTGAGGGATGCAGCTAAGGTGATACAGAGCATGATCCAGAAAAATCCGGAGTCCCTCAACTTCAATGTCATCGCTTTATATAAGAAATCCGGGTAG 810 0.437 MASSAKRWLPLEANPEVMNQFLWGLGLGENEAECCDVYGLDEELLQMVPNPVLAVLFLYPITTQSEEERLQQEKEKKVSLLSEQYRSKEYSSRVYFMKQTVGNACGTIGLLHALGNLTSEVKLGELLTCHWLILSVEVFNALDHIYQPVLLLPVEGSFFNNFFKSTASMDPLQRAKFLENDREMEVAHSVAATAGDTEASDNADAHFICFVCVDDELYELDGRKTWPISHGPCSSSTLLRDAAKVIQSMIQKNPESLNFNVIALYKKSG 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02607 269 Gene3D - 2 267 IPR036959 GO:0004843|GO:0006511
Vimu7g02607 269 Coils Coil 63 83 - -
Vimu7g02607 269 CDD Peptidase_C12_UCH_L1_L3 8 264 - -
Vimu7g02607 269 Pfam Ubiquitin carboxyl-terminal hydrolase, family 1 155 250 IPR001578 GO:0004843|GO:0006511
Vimu7g02607 269 Pfam Ubiquitin carboxyl-terminal hydrolase, family 1 8 127 IPR001578 GO:0004843|GO:0006511
Vimu7g02607 269 FunFam - 3 71 - -
Vimu7g02607 269 SUPERFAMILY Cysteine proteinases 6 266 IPR038765 -
Vimu7g02607 269 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 48 60 IPR001578 GO:0004843|GO:0006511
Vimu7g02607 269 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 10 27 IPR001578 GO:0004843|GO:0006511
Vimu7g02607 269 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 6 266 IPR001578 GO:0004843|GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02607 Vimu-Chr7 22041255 22043918 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02607 K05609 - gmx:100527755 382.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02607 7 22041255 22043918 Vimu7g02607 7 22041255 22043918 ECH