Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02555 ATGATTCATTTTGAGCATCGTAGGCCACCCACAAGTAGTGGTAAAGTTTTTACTGTTAAAAGAAATGGCCAACGATTACGGTTTTCAATCGTGAGAGTAGCGTTGTGTTGTTTACAAATGAGAAGTCCGAAGGCAGAGTCCGACGACAGGGACGTGACCATAGCAAGAGGTGAAGGAGAAGATGAATTGCGTCCTGGTTTTCAGGGATTGAAGTTTGACGGTGGAAGTGGTAGTGGTAAGAAAAAAAAAAGTATTCACCCTCCGATTGAAACGCATTGGGATCTGCATTCATCAACGTCAGGGAAAAAGTCTAATTCGTCACCTATCAAGTCACTCTTGTCATTGTCATTCCCGTTCATGAAATTCAGGAGGAGTAAAAGCCTTGTAATGATTCTAGAAGGAGCTCGTGATCCTAAGGATAAACAAATTGTCGAGTCTTTTCGCGAAATGCTTTTACAAGAATCTATCTTGCCACCTAAGCACGATGATTATCACACTCTTCTGAGAGTTAGCTTTCTAACTCCACAGCTTTTCAATGACGCAAGGTTTCTGCGCATGAGGGATTTCGACATGTCAAAATCCAAAGAAATGTTCCAAAATTATCTCAATTGGCGCAAGGAATTTCGAGTAGACCAGCTTCCAAAGGAATTCAATTTCACGGAGTACAATGAAGTGAAGAGCTGCTATCCTCATGGATACCACGGAGTTGATAGATATGGAAGACCCTTGTATATTGAGAGAATTGGGATGGTAGACCTTAACAAACTGGGCCAAGTTACCACATTTGAAAGGTTTATCAAACATCATGTGTTAGAACAAGAGAAAACTCTCAAACTAAGATACCCTGCATGTTCTCTGGCGGCTAAAAGGCACATAGCATCCACTACAAGTATCTTGGATGTCAACGGAGTAGGAATGTCTAATTTCTCAAAGCCCGCAAGGTACCTCTTCATGGAAATTCAGAAGATCGATAGCTGTTACTATCCTGAGACCCTAAATAAGCTATTTATTATTAATGCCGGATCTGGGTTTAAGATGCTGTGGAAAGCAGTAAAGACATTTCTAGATGAACGCACAGTAGCAAAAATTCAGGTGTTGGGCTCTAATTATCTCAGCGTGCTGCTTGAGGCTATCGAGCCGAGTAATTTGCCAACTTTTCTGGGTGGTAACTGCACATGTTCCGATTATGGAGGTTGTCTGATGAGTGATCGAGGGCCCTGGAAAAATCCAGAAGTGCTGGAAATGATTCAGGCTGTTAACTTGAGAGAAGAGATCGATGGTAAATGCGAGGATGTTGAGGTGGCTACAGAAGATTCCTCGATGCCTAAAAAGGTTGAGATGCAGACCAAAGATGGCGATAACACGTTGAGTCTGCTTGAGGAGACAGTGTGCGCGGGGTCAGACTCTGCATGTACTTGTAGGTTAGCAATGCAAAAAATTGATTGTCTTGAAGCTACTCTTGGAGACATACAGAATAAAATCAAGACGCTGGAAGATGCACTTCAAAAGACCATTGTGCCATCGAAAGAACAAGCACAGGATTCGGATCAACCAGCAGTTTAA 1563 0.4235 MIHFEHRRPPTSSGKVFTVKRNGQRLRFSIVRVALCCLQMRSPKAESDDRDVTIARGEGEDELRPGFQGLKFDGGSGSGKKKKSIHPPIETHWDLHSSTSGKKSNSSPIKSLLSLSFPFMKFRRSKSLVMILEGARDPKDKQIVESFREMLLQESILPPKHDDYHTLLRVSFLTPQLFNDARFLRMRDFDMSKSKEMFQNYLNWRKEFRVDQLPKEFNFTEYNEVKSCYPHGYHGVDRYGRPLYIERIGMVDLNKLGQVTTFERFIKHHVLEQEKTLKLRYPACSLAAKRHIASTTSILDVNGVGMSNFSKPARYLFMEIQKIDSCYYPETLNKLFIINAGSGFKMLWKAVKTFLDERTVAKIQVLGSNYLSVLLEAIEPSNLPTFLGGNCTCSDYGGCLMSDRGPWKNPEVLEMIQAVNLREEIDGKCEDVEVATEDSSMPKKVEMQTKDGDNTLSLLEETVCAGSDSACTCRLAMQKIDCLEATLGDIQNKIKTLEDALQKTIVPSKEQAQDSDQPAV 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02555 520 SMART sec14_4 221 392 IPR001251 -
Vimu7g02555 520 SUPERFAMILY CRAL/TRIO domain 222 416 IPR036865 -
Vimu7g02555 520 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 221 395 IPR001251 -
Vimu7g02555 520 PRINTS Cellular retinaldehyde-binding protein signature 179 201 - -
Vimu7g02555 520 PRINTS Cellular retinaldehyde-binding protein signature 348 367 - -
Vimu7g02555 520 PRINTS Cellular retinaldehyde-binding protein signature 381 390 - -
Vimu7g02555 520 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 98 440 - -
Vimu7g02555 520 SUPERFAMILY CRAL/TRIO N-terminal domain 137 214 IPR036273 -
Vimu7g02555 520 CDD SEC14 219 390 IPR001251 -
Vimu7g02555 520 Gene3D - 209 440 IPR036865 -
Vimu7g02555 520 Pfam CRAL/TRIO domain 229 389 IPR001251 -
Vimu7g02555 520 Coils Coil 480 500 - -
Vimu7g02555 520 MobiDBLite consensus disorder prediction 56 104 - -
Vimu7g02555 520 Gene3D - 131 208 - -
Vimu7g02555 520 MobiDBLite consensus disorder prediction 76 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02555 Vimu-Chr7 21694091 21697637 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02555 179 386 Acyl Lipid Metabolism Gene Families AT5G47730 29.524 2.12e-20 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02555 K26544 - gmx:100807344 737.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02555 7 21694091 21697637 Vimu7g02555 7 21694091 21697637 ECH