Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02553 ATGGCAAGGAGCTACTTCAAACAAGAGCATGATCTTGGTATACCTTTTGCTTCCTCTTTTTTCCCCCCAGTAGGCATTATATTAATAATAGTTTTCTTTCCAGAGAAGAGAAGAGCAGAGGCTGCTAGAATTAGAGAAAAATACCCAGACAGGATCCCGGTTATTGTGGAGAAGGCAGAAAGAAGTGACATCCCAAGTATTGACAAGAAAAAGTACCTTGTCCCTGCTGACTTAACTGTTGGACAGTTTGTCTACGTGATCCGCAAAAGGATCAAGCTAAGTGCAGAAAAGGCAATCTTTATATTTGTGGACAACGTCCTTCCTCCTACAGGAGCAATTATGTCTGCCATATATGATGAGAAGAAGGACGAGGATGGGTTTCTCTATGTTACATACAGTGGCGAGAACACCTTTGGGGATTTCATTTCCATTCAGGAGCCCTTATAA 447 0.4183 MARSYFKQEHDLGIPFASSFFPPVGIILIIVFFPEKRRAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYDEKKDEDGFLYVTYSGENTFGDFISIQEPL 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02553 148 Gene3D - 33 139 - -
Vimu7g02553 148 Pfam Autophagy protein Atg8 ubiquitin like 36 139 IPR004241 -
Vimu7g02553 148 SUPERFAMILY Ubiquitin-like 34 139 IPR029071 -
Vimu7g02553 148 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED 4 139 IPR004241 -
Vimu7g02553 148 FunFam Autophagy-related protein 31 139 - -
Vimu7g02553 148 CDD Ubl_ATG8 35 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02553 Vimu-Chr7 21680444 21682854 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02553 K08341 - gmx:100781703 222.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02553 7 21680444 21682854 Vimu7g02553 7 21680444 21682854 ECH
Vimu7g02553 7 21680444 21682854 Vimu7g02553 7 21680444 21682854 PCT