Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02549 ATGGCAATGCACAAGAGCAGTTCCGGTTCAGCATTGGGTCCAGGAGGCTTAGACCTAACTCAAGCCTTCTTTAAGTCCGTCATGAACGCTGAACCTTCTTCTCCCACAAAGCGCCACACCAAAATCTCCGTTATTGGTGCCGGAAACGTCGGAATGGCCATAGCCCAAACCATCCTCACTCAGGATCTCACCGACGAGCTTGTCCTCGTCGATGCCATTCCTGATAAACTCCGCGGCGAGATGCTCGACCTCCAGCACGCCGCCGCCTTCCTACCCCGCACCAGAATTCAGGCCTCAACCGACTACTCCGTCACTGCGGGCTCCGACCTTTGCATTGTCACCGCCGGTGCCCGCCAAATCCACGGCGAGTCCAGGCTGAACCTCCTACAAAGGAATGTCACCCTCTTTCAGAAAATCATACCCCCTTTGGTTCGTTACTCTCCCGACACCATTCTCCTTATCGTTTCAAATCCCGTGGACGTGCTCACTTACGTGGCATGGAAACTCTCTGGTTTCCCTTCGAATCGTGTCATCGGGTCCGGCACTAACTTGGACTCCTCACGCTTTCGTTTCCTCATCGCCGATCATCTTGATGTTAACGCTCAAGATGTCCAGGCTTTTATAGTGGGAGAACACGGTGACAGCTCAGTGGCTTTGTGGTCTAGCATTAGTGTTGGGGGTGTTCCAGTGCTGAGCTTTTTGGAGAAACAGGAAATTACGTACGAGAAGGAAATGTTGGAGAGCATACACAGAGAAGTTACAGAGAGTGCTTACGAGGTTATAAGTCTGAAAGGGTACACTTCTTGGGCGATAGGATACTCCGTGGCAAACTTGGCACGAAGCATTCTTAGGGACCAAAGGAGGGTCCACCCTGTGTCGGTTCTTGCAAAGGGTTTTTACGATATCGATGGTGAAGTTTTTCTTAGCTTGCCTGCGCAACTTGGAAGAGCAGGGGTATTGGGTGTCACCAATGTGCATTTCACTCAAGAAGAGAAACACAGGCTTATGAATTCAGCCACCACAATCCTCCAAGTTCAGAATCACTTGACTATTTGA 1056 0.5076 MAMHKSSSGSALGPGGLDLTQAFFKSVMNAEPSSPTKRHTKISVIGAGNVGMAIAQTILTQDLTDELVLVDAIPDKLRGEMLDLQHAAAFLPRTRIQASTDYSVTAGSDLCIVTAGARQIHGESRLNLLQRNVTLFQKIIPPLVRYSPDTILLIVSNPVDVLTYVAWKLSGFPSNRVIGSGTNLDSSRFRFLIADHLDVNAQDVQAFIVGEHGDSSVALWSSISVGGVPVLSFLEKQEITYEKEMLESIHREVTESAYEVISLKGYTSWAIGYSVANLARSILRDQRRVHPVSVLAKGFYDIDGEVFLSLPAQLGRAGVLGVTNVHFTQEEKHRLMNSATTILQVQNHLTI 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02549 351 NCBIfam L-lactate dehydrogenase 44 342 IPR011304 GO:0004459|GO:0005737
Vimu7g02549 351 ProSitePatterns L-lactate dehydrogenase active site. 209 215 IPR018177 GO:0004459
Vimu7g02549 351 Pfam lactate/malate dehydrogenase, NAD binding domain 40 179 IPR001236 GO:0016491
Vimu7g02549 351 FunFam Malate dehydrogenase 35 181 - -
Vimu7g02549 351 PIRSF Lac_mal_DH 36 351 IPR001557 GO:0016616|GO:0019752
Vimu7g02549 351 Hamap L-lactate dehydrogenase [ldh]. 39 350 IPR011304 GO:0004459|GO:0005737
Vimu7g02549 351 PRINTS L-lactate dehydrogenase signature 153 173 IPR001557 GO:0016616|GO:0019752
Vimu7g02549 351 PRINTS L-lactate dehydrogenase signature 41 65 IPR001557 GO:0016616|GO:0019752
Vimu7g02549 351 PRINTS L-lactate dehydrogenase signature 177 195 IPR001557 GO:0016616|GO:0019752
Vimu7g02549 351 PRINTS L-lactate dehydrogenase signature 207 220 IPR001557 GO:0016616|GO:0019752
Vimu7g02549 351 PRINTS L-lactate dehydrogenase signature 66 90 IPR001557 GO:0016616|GO:0019752
Vimu7g02549 351 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 27 179 IPR036291 -
Vimu7g02549 351 PANTHER L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) 19 349 - -
Vimu7g02549 351 Gene3D - 20 181 - -
Vimu7g02549 351 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 182 343 IPR022383 GO:0016616
Vimu7g02549 351 CDD LDH_1 37 346 - -
Vimu7g02549 351 Gene3D - 182 349 IPR015955 GO:0003824|GO:0016616
Vimu7g02549 351 SUPERFAMILY LDH C-terminal domain-like 180 349 IPR015955 GO:0003824|GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02549 Vimu-Chr7 21666129 21667264 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02549 K00016 - gmx:100818856 623.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02549 7 21666129 21667264 Vimu7g02549 7 21666129 21667264 ECH
Vimu7g02549 7 21666129 21667264 Vimu7g02549 7 21666129 21667264 PCT