Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02547 ATGCGAGTGAAAGAGATGCACCAACTGTGTTGTATCTCTCTGGAGAGTCCTGGAATCGGCAACCATTCCCCGGAGCGGATGGCGGCCAGACTTTTCCAAACGAGGAGCTTCCCGGCAGTGGGATCTCTGGGCAATGCTGCTCAAAGATGGGAGACCACGGTGGCCGGCGTTCTCTACAAGTGGACCAATTACGGCAAAGGCTGGAGATCCCGATGGTTCCTCCTCAGGAACGGTGTTCTCTCTTATGCCAAGATCAGATGTCCGGAGAATCTCAACCTCCTCACTTCTTCGGACGACATTAGCTTCATCGGAGAGATTTCCACCAACCGACTCGCACGAGTGGACAGAGTTGCTCCTGCCACACGACGAAAACACCGCAAAGCTTCTTCCTCTTCCCGTGTTGTCCATCTCAAGAGTGGGTCACATCAACAGGTGGCCATCGAGGGTACGGTAGACTACGTCGTAGCCCTAGGTAAGATTTCATCATTTAGAGAGAGCAAGTCAGATGATCGGCGTTTCTATATATTTACAGCAACGAAAACTCTCCATCTGAGAACTGATTCGAGGAATGATCGGGTAGCGTGGATACAGGCATTGGTTTCGACACGTGGCCTGTATCCTCATCAAGCCCTCAATGATCATCTCTTGCTTACACCCAATGATATATCCGTGTCAACCGACAGGCTTAAGTCACGCTTACTTGAAGAGGGAACCAGTGAGAACCTTGTAAAGGAGTGCGAACAAATCATGCTCTCAGAGTTCTCCGAAATGCAAGGACAACTTGAAGTTCTTTGTCAAGAGCGATCTAATCTGCTTGATACAATAAGGCAATTGGAGGTCATTTCTTACCTTGTCCTTTATTCTGGAGTGCTTGTCACTATCTTCCTCTATATTGGAATAGAAACTATTCTTCCTGAGCATGCTGATTTCATTTATCACACTTCGCTAGATTCTGGAATTATCATATGCACCATCGCTGTGTACAACCTTTTGGTTTCAGAATGTAGTACAACTGAATCATCTGATGATATTGAGAAACAAGAGATGGAGGAAGTATCAGATGAAGATGAAATCTCATATTATGATACTATAGACTGTTTTACGGAGTGTGAGTCAGAAAGAGCTATAAATGAAGTGGACAGGTGTAGGGAAGCCAGCACGCAATGCACTGATACAGAGAACATTTATCCTGAGAAAATGGTTTGTAATTATAAGCACCCTCAGATAGCAAGACGAAAAAAGCTTCCAGATCCTGTTGAGAAAGAGAAGGGTGTTAGTCTTTGGTCAATGATCAAGGACAACGTGGGAAAAGATCTCACGAGAGTTTGTCTCCCGGTATACTTTAATGAGCCTATATCATCCCTACAAAAATGTTGTGAGGACTTGGAGTACTCTTATCTACTGGATCTAGCTCACGAGTACGGAAAATCAGGAAACGGTCTTCTTCGGGCACTGTATGTTGCTGCCTTTGCAGTTTCGGGTTATGCGTCATCTGAAGGTCGTAACTGTAAACCCTTTAATCCTTTACTGGGTGAAACCTACGAAGCTGATTACCCCGAGAAAGGAATTCGCTTCTTTTCAGAGAAGGTCAGCCATCATCCAACACTCATTGCCTGCCACTGCGAAGGTAGAGGATGGAAGTTTTGGGCTGACAGCAACATCCATTCAAAGTTTCGGGGAAGGTCAATTCAGCTTGATCCAGTGGGTGTTCTGACCCTAGAGTTCAATGATGGTGAAATATTTCAGTGGAGCAAGGTCACCACCACGATCTATAATCTCATTCTTGGGAAAATATACTGTGATCATCATGGGAACATGGATATACGTGGCAATCGGAAGTATTCGTGCAGACTCAAGTTCAAAGAGCAGACGATACTCGACCGAAATCCTCGCCAAGTACATGGATTTGTGGAAGATGTAACGGGGAAAAAAGTTGCGACATTGTTTGGGAAGTGGGATGACAGCATGTACTATATGAGTGGTAATGTAAATGTGAAGCCTAAAGATTTGAATTCACCAAACGCATCATTGTTGTGGAAAAGGACGATGGCATCTCCTAATGTGAGTCGGTATAATTTGACACCATTTGCCATGACTCTGAATGAGCTTACTCCGGGACTGAAGGAGAATCTCCCGCCTACGGATTCCAGGCTTAGACCTGATCAACGACATCTAGAGAATGGGGAATACGACAAGGCTAATTTGGAGAAACAAAGGCTGGAAAAGCGTCAGAGAATGTCAAGGAAAATACAAGAAAATGGTTGGAAGCCTAGGTGGTTCCGAAGAGAAGGTGAAAGTGGAACCTTTCGATACATTGGTGGATACTGGGAAGCGAGAGAACTTCGAAGCTGGGACGGTTGCCCTGATATATTTAGTGAAATCAATGAAGAGTCTGCCGATTCATTAGGTGCATTTTAA 2418 0.45 MRVKEMHQLCCISLESPGIGNHSPERMAARLFQTRSFPAVGSLGNAAQRWETTVAGVLYKWTNYGKGWRSRWFLLRNGVLSYAKIRCPENLNLLTSSDDISFIGEISTNRLARVDRVAPATRRKHRKASSSSRVVHLKSGSHQQVAIEGTVDYVVALGKISSFRESKSDDRRFYIFTATKTLHLRTDSRNDRVAWIQALVSTRGLYPHQALNDHLLLTPNDISVSTDRLKSRLLEEGTSENLVKECEQIMLSEFSEMQGQLEVLCQERSNLLDTIRQLEVISYLVLYSGVLVTIFLYIGIETILPEHADFIYHTSLDSGIIICTIAVYNLLVSECSTTESSDDIEKQEMEEVSDEDEISYYDTIDCFTECESERAINEVDRCREASTQCTDTENIYPEKMVCNYKHPQIARRKKLPDPVEKEKGVSLWSMIKDNVGKDLTRVCLPVYFNEPISSLQKCCEDLEYSYLLDLAHEYGKSGNGLLRALYVAAFAVSGYASSEGRNCKPFNPLLGETYEADYPEKGIRFFSEKVSHHPTLIACHCEGRGWKFWADSNIHSKFRGRSIQLDPVGVLTLEFNDGEIFQWSKVTTTIYNLILGKIYCDHHGNMDIRGNRKYSCRLKFKEQTILDRNPRQVHGFVEDVTGKKVATLFGKWDDSMYYMSGNVNVKPKDLNSPNASLLWKRTMASPNVSRYNLTPFAMTLNELTPGLKENLPPTDSRLRPDQRHLENGEYDKANLEKQRLEKRQRMSRKIQENGWKPRWFRREGESGTFRYIGGYWEARELRSWDGCPDIFSEINEESADSLGAF 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02547 805 FunFam oxysterol-binding protein-related protein 1D isoform X1 512 683 - -
Vimu7g02547 805 FunFam Oxysterol-binding protein-related protein 2A 722 793 - -
Vimu7g02547 805 Pfam Pleckstrin homology domain 56 199 - -
Vimu7g02547 805 Gene3D - 47 203 IPR011993 -
Vimu7g02547 805 ProSiteProfiles PH domain profile. 51 204 IPR001849 -
Vimu7g02547 805 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 53 779 IPR000648 GO:0008289
Vimu7g02547 805 SMART PH_update 52 206 IPR001849 -
Vimu7g02547 805 Coils Coil 723 752 - -
Vimu7g02547 805 Gene3D - 722 783 - -
Vimu7g02547 805 Pfam Oxysterol-binding protein 426 780 IPR000648 GO:0008289
Vimu7g02547 805 SUPERFAMILY Oxysterol-binding protein-like 421 793 IPR037239 -
Vimu7g02547 805 Gene3D - 512 679 - -
Vimu7g02547 805 SUPERFAMILY PH domain-like 53 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02547 Vimu-Chr7 21641245 21650166 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02547 K20456 - gmx:100819924 1319.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02547 7 21641245 21650166 Vimu7g02547 7 21641245 21650166 ECH
Vimu7g02547 7 21641245 21650166 Vimu7g02547 7 21641245 21650166 PCT