Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02515 ATGGCTTGTGCACACTCCTACCATTGCGCGGCGAGTCTGATATTCCGGTCCGACACTGGACCTCGTTTGGGCCAGATTTTGACGCTAGAGAGTCCTCAAAGTTCGTGGCTTGGAACTGAGCTTAGGGTTTCATCATGCAGTCTCAATCTCAGAAATCACGTGCCTGTTTCACGGCGCCGGCCCCTAGCCGTCACGGTCTCCGTTAGCCTTCCCACGGCAAAACCAGAGCATGCTTCTCCTGGCCAAAAATTTCCCAAATGGTCTTCCAAGGCTATAAAATCGTTTGCAATGTCTGAATTGGAGGCTAGGAAACTTAAGTATCCTACTACCGGAACTGAAGCCCTTCTCATGGGGGTTCTCATCGAGGGCTACCAAGCTTTGCTTCTTGGACCACTGAGAGATGAGAGCAAGAAAGACATAACCCTTGAATGTTTGAAGCCTTATTTTGGTCAGCAATTTGAGAACAACAGAGAACAATCCAAGCACAGCATGCAGACAACCACCCAAAAACATTCCCAACATGCACCAATACCCAAGCACTCCCAGCCAGACAAGAATCCAGCACACACCCATTTTAAGAACAACATCCATATAGCTCCCAACCAAACAAGAAATGATAAACTAAGAACCGAGGCCACTCAGCTAAGGGAGAGAAATGTCATACAACAAAACGGAGAGTGTAGAGTAAAACACAACACTGGTGTGCTGGTGGGGATTATTGAGTCTGGTTCCCACACAGCTTGGGATTTAGTGTTTCCAAAACCGACATTATTCCTAACCTATCAGTGGGCTTTAGGTACTAATCTAGCTGCCAAGTTTTTGCGAGCTAATGGAATTTCACTTCTCAAGGTTCAAGATGAATCAGTGAAGTTACTTGGAAAAGGTGATTTGTTTTTCTTCAGCCCGGAGCATCCTCCACTGACCGATGAGGCTCAGAGAGCTCTTGATTGGGCTGTTGATCGAAAAATAAAATCTGGTGATGACGGGGAAATGACCACGGCGCACATACTTCTTGGTATCTGGTCCGAAGCTGGATCTCCTGGTCACAAGATTCTGTCCACCCTTGGCTTTAATGATGAAAAAGCTGGAGAACTTGAGTCCTTAATTTCTAAACCTGGATGTACGGATGATTGA 1134 0.4638 MACAHSYHCAASLIFRSDTGPRLGQILTLESPQSSWLGTELRVSSCSLNLRNHVPVSRRRPLAVTVSVSLPTAKPEHASPGQKFPKWSSKAIKSFAMSELEARKLKYPTTGTEALLMGVLIEGYQALLLGPLRDESKKDITLECLKPYFGQQFENNREQSKHSMQTTTQKHSQHAPIPKHSQPDKNPAHTHFKNNIHIAPNQTRNDKLRTEATQLRERNVIQQNGECRVKHNTGVLVGIIESGSHTAWDLVFPKPTLFLTYQWALGTNLAAKFLRANGISLLKVQDESVKLLGKGDLFFFSPEHPPLTDEAQRALDWAVDRKIKSGDDGEMTTAHILLGIWSEAGSPGHKILSTLGFNDEKAGELESLISKPGCTDD 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02515 377 SUPERFAMILY Double Clp-N motif 266 361 IPR036628 -
Vimu7g02515 377 MobiDBLite consensus disorder prediction 157 203 - -
Vimu7g02515 377 ProSiteProfiles Clp repeat (R) domain profile. 84 372 IPR004176 -
Vimu7g02515 377 MobiDBLite consensus disorder prediction 157 176 - -
Vimu7g02515 377 Pfam Clp amino terminal domain, pathogenicity island component 327 369 IPR004176 -
Vimu7g02515 377 Gene3D - 86 182 IPR036628 -
Vimu7g02515 377 Gene3D - 234 377 IPR036628 -
Vimu7g02515 377 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT1, CHLOROPLASTIC 266 376 IPR044217 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02515 Vimu-Chr7 21434289 21439887 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02515 - - vum:124836960 234.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02515 7 21434289 21439887 Vimu7g02515 7 21434289 21439887 ECH