Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02496 ATGGACGAATCGTTCACTCCACCTCCTCCAATGTCCTCTTCCCAGCACAACCATGTCAAACGAATGCTAAATTCCAATCGCTTCAAATCACCTTCCAAAACAATCTACTCCGACCGCTTCATACCCAGCAGATCCGCTTCCAATTTCGATCTGTTTAACCTATCGCCGTACACGGAGGACGGTTGTAGTTGCAGCCCCTATGGCAGTGCGCTGCGGAGTGCCTTGTTTGGACCTTCCACACCCAACAAATTCGAAAGCCCTAATATATTTCGTTTCAAATCGGAGACTCGACAGTCCATGCACTCTCTTTCTCTCACTCCTTTTAGTTCCCAAGATGTCCTTCTCCCTGGCTATGACTACAATCATAAGCCTCTTAAGCGCCCTCGAAAGATTCCTCCCTCGTCTTTTAAGGTTCTAGATGCGCCGGCTCTGCAAGACGATTTTTATCTGAATCTCGTGGATTGGTCCTCCAGCAATGTCTTGGCTGTGGCTCTGGAAAACTCTGTTTATTTGTGGAATGCTTCTAGCAGTAAGGTAACTAAGCTATGCGATTTGGGGGTTGACGACTCCGTTTGTTCAGTTGGCTGGGCTCCGCTTGGCACGTACTTGGCTGTCGGATCAAACAGTGGAAAAGTCCAGATCCATGCTCCTGTTCAGACCCCATTGGTTGGAAAGAGTGGTTCACTTACACTTAAAGCCAAGGCTGACATAATTTGTCGTGTTAGTGAGTCTAATAAACTTAGCCTCTTTGTTTTGATTTGGGATGTATCTCAAGGGAAGTCTATAAGAACTATGGAGGGTCATCGATTACGTGTTGGGACCTTGGCCTGGAGTTCATCTCTTTTGTCTTCTGGTAGCCGGGATAAAAGCATTTACCAACGAGACATACGTGTACAGGAGGATTTTGTCAGTAAACTGTCTGGGCATAAATCAGAGGTTTGTGGACTGAAGTGGTCTTATGATAACCGTGAGTTAGCATCAGGTGGAAATGACAACAAGCTACTTGTTTGGAATCAGAACTCCACCCAGCCCGTCCTGAAGTTCTGTGAGCATACAGCAGCTGTTAAAGCTATCGCGTGGTCTCCTCATACAAATGGACTTCTTGCATCTGGAGGAGGTACTGCAGACCGAAGCATTCGTTTCTGGAGTACAACCACAAACTCACAGTTAAACTGCATCGACACTGGAAGTCAGGTTTGTAATCTTGTCTGGTCTAAAAATGTAAATGAATTGGTGAGCACGCACGGCTACTCCCAGAATCAGATAATGGTTTGGAAATATCCCACCATGTCAAAGCTGGCAACTCTTACAGGCCATACTTACAGAGTTCTTTATCTTTCCATTTCTCCTGATGGACAGACTATTGTCACTGGAGCTGGAGATGAAACCCTAAGATTTTGGAATGTGTTCCCTTCGCGGAAATCACAGATGCAGGAATTCAGCTTGATGCAGGATCCAGAAATGTATTAA 1470 0.4571 MDESFTPPPPMSSSQHNHVKRMLNSNRFKSPSKTIYSDRFIPSRSASNFDLFNLSPYTEDGCSCSPYGSALRSALFGPSTPNKFESPNIFRFKSETRQSMHSLSLTPFSSQDVLLPGYDYNHKPLKRPRKIPPSSFKVLDAPALQDDFYLNLVDWSSSNVLAVALENSVYLWNASSSKVTKLCDLGVDDSVCSVGWAPLGTYLAVGSNSGKVQIHAPVQTPLVGKSGSLTLKAKADIICRVSESNKLSLFVLIWDVSQGKSIRTMEGHRLRVGTLAWSSSLLSSGSRDKSIYQRDIRVQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNKLLVWNQNSTQPVLKFCEHTAAVKAIAWSPHTNGLLASGGGTADRSIRFWSTTTNSQLNCIDTGSQVCNLVWSKNVNELVSTHGYSQNQIMVWKYPTMSKLATLTGHTYRVLYLSISPDGQTIVTGAGDETLRFWNVFPSRKSQMQEFSLMQDPEMY 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02496 489 ProSiteProfiles Trp-Asp (WD) repeats profile. 436 469 IPR001680 GO:0005515
Vimu7g02496 489 SMART WD40_4 176 216 IPR001680 GO:0005515
Vimu7g02496 489 SMART WD40_4 299 338 IPR001680 GO:0005515
Vimu7g02496 489 SMART WD40_4 386 426 IPR001680 GO:0005515
Vimu7g02496 489 SMART WD40_4 132 173 IPR001680 GO:0005515
Vimu7g02496 489 SMART WD40_4 429 468 IPR001680 GO:0005515
Vimu7g02496 489 SMART WD40_4 258 295 IPR001680 GO:0005515
Vimu7g02496 489 SMART WD40_4 341 383 IPR001680 GO:0005515
Vimu7g02496 489 SUPERFAMILY WD40 repeat-like 145 469 IPR036322 GO:0005515
Vimu7g02496 489 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 436 469 - -
Vimu7g02496 489 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 18 475 IPR033010 GO:0010997|GO:0097027|GO:1904668
Vimu7g02496 489 Gene3D - 125 472 IPR015943 GO:0005515
Vimu7g02496 489 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 306 338 - -
Vimu7g02496 489 Pfam WD domain, G-beta repeat 432 468 IPR001680 GO:0005515
Vimu7g02496 489 Pfam WD domain, G-beta repeat 343 383 IPR001680 GO:0005515
Vimu7g02496 489 Pfam WD domain, G-beta repeat 303 338 IPR001680 GO:0005515
Vimu7g02496 489 ProSitePatterns Trp-Asp (WD) repeats signature. 455 469 IPR019775 -
Vimu7g02496 489 ProSiteProfiles Trp-Asp (WD) repeats profile. 306 347 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02496 Vimu-Chr7 21324176 21329521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02496 293 469 Miscellaneous Gene Families AT5G08390 24.157 5.87e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02496 K03364 - gmx:100785726 791.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02496 7 21324176 21329521 Vimu7g02496 7 21324176 21329521 ECH
Vimu7g02496 7 21324176 21329521 Vimu7g02496 7 21324176 21329521 PCT