LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu7g02429	ATGATGAACGAGAAACAACCTCAATTACTCTCTAAGATTGCCACCGGCAATGGCCACGGTGAGGACTCCCCTTACTTCGATGGCTGGAAGGCCTATGAAGATGATCCCTTCCACCCCACCCAGAATCCTAACGGGGTTATCCAAATGGGACTTGCAGAAAATCAGCTTGCTTCGGAGCTGGTTCAGCATTGGTTAGTGAATAACCCAGGGGCTTCCATTTGCACACGAGAAGGAGTGCGTGATTTCAAAGCCATTGCCAACTTTCAGGATTATCATGGTCTACCGGAGTTCAGAAATGCAGTGGCTAAATTCATGGGAAGAACGAGAGGAAATAGAGTAACGTTCGACCCTGAGCGAATTGTTATGAGCAGTGGAGCAACAGGAGTACACGAGGTGACTGCGTTTTGTTTGGCAGATCCCGGTGACGCATTTTTGGTCCCCACACCTTATTATGCAGGTTTCGACAGGGATTTAAGGTGGAGAACGGGGGTTCAACTTGTTCCAGTTATCTGCAAAAGCTCTAACGATTTCAAGTTGACGAGGAAAGCATTGGACGAGGCGTACGAGAAAGCCAAAGAGGACAACATCAGAATAAAGGGGTTACTGATTACCAATCCATCAAACCCACTGGGAACTGTGATGAACCGAGAAACTCTAAGAACAGTGCTGGGTTTTATCAACGAAAAACAGATCCACCTAGTAAGCGACGAAATATACGCGGGTACGGTTTTTTGCTACCCAGGATTCACGAGCATCGTGGAGGTAGTAGAGGAAGACAAAGACATCGAATGTGACCGTGACCTTATCCACATTGTTTATAGTCTTTCTAAGGACATGGGGTTCCCCGGTTTCAGAGTTGGCATCATATACTCTTACAACGACGCAGTGGTCAGTTGCGCTCGGAAAATGTCTAGCTTTGGGTTGGTGTCTACGCAGACACAGTACCTTATGGCAACAATGCTTTCTGATGATGAGTTCGTGAAAGGGTTTCTGGAAGAGAGTGCAAAGAGGCTTGCGCAAAGGTATGGGGTTCTTTGTAGGGGTCTTGAGCAGGTTGGCATAAAGTGTTTGGCGAGCAATGGCGGACTATTTGTGTGGATGGATTTGCGTGGTCTTTTGAAGAAGGCGACGTTTGAGGCAGAAATGGAACTGTGGAGAGTGATCATTCACCACGTTAAGATCAACATCTCCCCTGGCTCTTCCTTTCACTGCTCTGAGCCAGGATGGTTCAGGGTCTGCTATGCCAACATGGATGATAGAGCCGTGGAGGTTTCTCTGGCGAGAATGCGCACCTTTGTTCGTCAGAATACAGAAACAAAGAAGAAATCTTGCAGCTACAGAAAGTTGAGTCTAAGCTTCTCATCGAGAAGGTTGGATGATTTTTTGGTGTCACCTCACTCACCTTTTCCTCAGTCACCTCTAGTTAAAGCCTCCACTTGA	1440	0.4708	MMNEKQPQLLSKIATGNGHGEDSPYFDGWKAYEDDPFHPTQNPNGVIQMGLAENQLASELVQHWLVNNPGASICTREGVRDFKAIANFQDYHGLPEFRNAVAKFMGRTRGNRVTFDPERIVMSSGATGVHEVTAFCLADPGDAFLVPTPYYAGFDRDLRWRTGVQLVPVICKSSNDFKLTRKALDEAYEKAKEDNIRIKGLLITNPSNPLGTVMNRETLRTVLGFINEKQIHLVSDEIYAGTVFCYPGFTSIVEVVEEDKDIECDRDLIHIVYSLSKDMGFPGFRVGIIYSYNDAVVSCARKMSSFGLVSTQTQYLMATMLSDDEFVKGFLEESAKRLAQRYGVLCRGLEQVGIKCLASNGGLFVWMDLRGLLKKATFEAEMELWRVIIHHVKINISPGSSFHCSEPGWFRVCYANMDDRAVEVSLARMRTFVRQNTETKKKSCSYRKLSLSFSSRRLDDFLVSPHSPFPQSPLVKAST	479

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu7g02429	479	ProSitePatterns	Aminotransferases class-I pyridoxal-phosphate attachment site.	274	287	IPR004838	GO:0003824\|GO:0009058\|GO:0030170
	Vimu7g02429	479	Gene3D	Aspartate Aminotransferase, domain 1	35	428	IPR015422	GO:0003824
	Vimu7g02429	479	CDD	AAT_like	87	430	-	-
	Vimu7g02429	479	Gene3D	-	69	323	IPR015421	GO:0003824
	Vimu7g02429	479	PANTHER	BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED	10	434	-	-
	Vimu7g02429	479	Pfam	Aminotransferase class I and II	47	425	IPR004839	GO:0009058\|GO:0030170
	Vimu7g02429	479	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	141	162	-	-
	Vimu7g02429	479	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	268	292	-	-
	Vimu7g02429	479	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	82	98	-	-
	Vimu7g02429	479	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	49	75	-	-
	Vimu7g02429	479	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	119	139	-	-
	Vimu7g02429	479	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	300	323	-	-
	Vimu7g02429	479	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	195	219	-	-
	Vimu7g02429	479	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	231	254	-	-
	Vimu7g02429	479	SUPERFAMILY	PLP-dependent transferases	19	434	IPR015424	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu7g02429	Vimu-Chr7	20810819	20813443	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu7g02429	K20772		-	gmx:100793020	837.41

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu7g02429	7	20810819	20813443	Vimu7g02429	7	20810819	20813443	ECH
	Vimu7g02429	7	20810819	20813443	Vimu11g04450	11	65594684	65596923	PCT