Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02428 ATGGCAGCTTCTTCGTTGGCAGCATCTTCCATCCTCCTTCCATTCACAACAAACCCTAAATCCCCTCACCTATTTGCCTCTTTCCCTTGCAAAAACAATACCCTCCTTCCCAGCCTCCGTCTCAGACACATCTCAGCCTCAGCCTCAGCGGCTTCAATCCCAACCCCTTCCGTTCAAGTTGACAACTCTCCACCCTCCGCCGCACCTTCCAAAGTTCTTCCCTTTCGGGTCGGTCACGGTTTCGACCTCCATCGTTTGGAACCCGGTTACCCGTTAATCATCGGCGGCATTAACATACCCCACGAAAGAGGTTGCGAGGCTCACTCCGATGGGGACGTTCTGCTTCACTGCGTCGTTGATGCTATTTTGGGGGCGTTAGGTCTTCCTGATATAGGCCAAATATTTCCTGATTCTGATCCTAAGTGGAAGGGTTGTGACTCTTCAGTCTTCATCAAAGAATCTGTTAGACTTATGCATGAAGCCGGTTATGAAATTGGAAATTTAGATGCTACATTGATACTTCAGCGGCCAAAACTAAGCCCGCACAAGGACACTATCAAAACCAACTTATCTGCACTGCTTGGAGTGGACTCTTCTGTAGTAAATATCAAAGCAAAAACTCATGAAAAGGTGGACAGCCTTGGGGAGAATAGAAGTATAGCGGCTCACACAGTGGTTCTTTTAATGAAAAAATGA 696 0.4741 MAASSLAASSILLPFTTNPKSPHLFASFPCKNNTLLPSLRLRHISASASAASIPTPSVQVDNSPPSAAPSKVLPFRVGHGFDLHRLEPGYPLIIGGINIPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGCDSSVFIKESVRLMHEAGYEIGNLDATLILQRPKLSPHKDTIKTNLSALLGVDSSVVNIKAKTHEKVDSLGENRSIAAHTVVLLMKK 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02428 231 PANTHER 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE, CHLOROPLASTIC 5 231 IPR003526 GO:0008685|GO:0016114
Vimu7g02428 231 NCBIfam 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 76 230 IPR003526 GO:0008685|GO:0016114
Vimu7g02428 231 Pfam YgbB family 75 228 IPR003526 GO:0008685|GO:0016114
Vimu7g02428 231 CDD MECDP_synthase 76 228 IPR003526 GO:0008685|GO:0016114
Vimu7g02428 231 ProSitePatterns 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 109 124 IPR020555 GO:0008685
Vimu7g02428 231 Hamap 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 75 230 IPR003526 GO:0008685|GO:0016114
Vimu7g02428 231 SUPERFAMILY IpsF-like 74 230 IPR036571 GO:0008685|GO:0016114
Vimu7g02428 231 Gene3D - 72 231 IPR036571 GO:0008685|GO:0016114
Vimu7g02428 231 FunFam 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 72 231 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02428 K01770 - gmx:100306378 378.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02428 7 20784414 20786257 Vimu7g02428 7 20784414 20786257 ECH