Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02425 ATGGGATACAATTTGGTGTTCATTGTTGTGTTCTTGTGGAGTTCAATGGTTAGTCACAATGGATTAGCCATGATGGAGGATGGGAAGTTGACGAGCTCCTCAGGCTCATCTAATTATGATTATGCAGATGCTCTTGGCAAAGCCATTTTGTTTTTTGAAGGACAACGCTCAGGGAAGTTGCCGTCAAACCAAAGAGTGAAGTGGAGGGAAGACTCCGCTCTCTCTGATGGCAAACTTCAAAACGTGAATTTGATTGGAGGGTACTACGATGCTGGTGATAACGTCAAGTTTGGATGGCCGATGGCATTTGCTACGAGTTTATTGAGTTGGGCTGCTGTAGAGTACGAGAATGAGATATCTTCGGTGAACCAGCTTGGTTATCTCCAAAGTGCTATCCGTTGGGGTGCAGACTTCATACTCAGGGCTCATACTTCCCCAACCACCCTCTATACACAGGCCTTAAACCATTTTCTAAGATCAAAACTTGTGTACATATCAAAACCTAAACACGTTGGAGATGGGAACGCTGATCACAACTGCTGGGAGCGGCCAGAAGACATGGATACACCAAGGACATTGTATAAGATAGATGCGAATTCTCCAGGAACTGAAGCCGCAGCTGAGTCTGCTGCTGCTCTTTCTGCTGCTTCAATTGTATTCCGGAAAATAGATGCCAAGTATTCCTCCACGCTATTAAGCCATTCAAAATCACTGTTTGATTTTGCAGACAAGAACAGAGGTTCTTATTCCGGTTCTTGCCCATTCTATTGCTCGTACTCCGGTTACCAGGATGAACTGCTATGGGCGGCTGCTTGGTTGTACAAGGCAACTGGAGAAAGCAAGTATCTGACCTACATCATAAGTAACCAAGGACAGAGCCAGGCAGTGTCTGAATTCAGCTGGGACAACAAATTTGTTGGGGCTCAGACATTACTAACCGAGGAATTCTACGGTGGAAAGAAAGACCTGAGCAAGTTTAAGAGTGACGCCGAGTCATTTATATGCTCTGTGATGCCAGAAAGTAGCTCTCGACAGATTAAAACAACTCCTGGTGGTCTTCTGTTTACTAGAGATAGTAGCAATTTGCAATATACCACGAGCTCGACCATGGTGCTGTTCATTTTCTCTAGAATCCTAAACAGAAATCACATCAACGGAATCAATTGTGGCTCCGCGCATTTCACACCGTCTCAAATTAGAGCCTTTGCCAAAACACAGGTGGACTACATATTAGGAAACAATCCGATGAAGATGTCTTACATGGTGGGATTTGGCAGCAAATACCCAAAGCAATTACATCACAGAGCCTCGTCCATTCCTTCAATCAAAGTTCATCCAGCGAAGGTGGGTTGCAATGGTGGTCTATCAGATTATTACAATTCTCCTAATCCAAATCCCAATACTCATGTGGGTGCCATTGTTGGAGGCCCCGATTCAAATGACCATTTCAATGATGCAAGATCTGACTATTCCCACACCGAGCCTACCACATACATGAATGCTGCTTTCGTCGCTTCAGTGTCTGCTTTGCTTGCCAAAACCTAA 1545 0.446 MGYNLVFIVVFLWSSMVSHNGLAMMEDGKLTSSSGSSNYDYADALGKAILFFEGQRSGKLPSNQRVKWREDSALSDGKLQNVNLIGGYYDAGDNVKFGWPMAFATSLLSWAAVEYENEISSVNQLGYLQSAIRWGADFILRAHTSPTTLYTQALNHFLRSKLVYISKPKHVGDGNADHNCWERPEDMDTPRTLYKIDANSPGTEAAAESAAALSAASIVFRKIDAKYSSTLLSHSKSLFDFADKNRGSYSGSCPFYCSYSGYQDELLWAAAWLYKATGESKYLTYIISNQGQSQAVSEFSWDNKFVGAQTLLTEEFYGGKKDLSKFKSDAESFICSVMPESSSRQIKTTPGGLLFTRDSSNLQYTTSSTMVLFIFSRILNRNHINGINCGSAHFTPSQIRAFAKTQVDYILGNNPMKMSYMVGFGSKYPKQLHHRASSIPSIKVHPAKVGCNGGLSDYYNSPNPNPNTHVGAIVGGPDSNDHFNDARSDYSHTEPTTYMNAAFVASVSALLAKT 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02425 514 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 409 435 IPR018221 -
Vimu7g02425 514 Pfam Glycosyl hydrolase family 9 41 505 IPR001701 GO:0004553|GO:0005975
Vimu7g02425 514 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 483 501 IPR033126 -
Vimu7g02425 514 Gene3D - 37 513 IPR012341 GO:0005975
Vimu7g02425 514 SUPERFAMILY Six-hairpin glycosidases 37 512 IPR008928 GO:0005975
Vimu7g02425 514 PANTHER ENDO-1,4-BETA-GLUCANASE 23 511 - -
Vimu7g02425 514 FunFam Endoglucanase 37 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02425 Vimu-Chr7 20774682 20777372 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02425 22 514 Glycoside Hydrolase AT4G23560 68.154 0.0 677
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02425 - - gmx:547834 851.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02425 7 20774682 20777372 Vimu7g02425 7 20774682 20777372 ECH