Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02395 ATGGCTCAAACAAGAAACGAGGTTACCATTACGGAGAAACTTTTAGCGACGAAATCATCTTCATCCTCGTATTCTACCAATCTTTGGGACTGTGGCAGCACGCTCTACGATTCATTTGAGCTCAACTCCTTCAATCGTCAACTCCACTCCGCCATAGCTAAATCCCCTATAACTAGAACGCTTTCCATGCCTCACTTACCGGAGCGTTCACTTCACGCGTTTCCGGTTCAGCCACCTCCACCTTCCATCGCCATGCCACGAAAGTTCTTCAACTTCTCTCGCTCCTTTCACAAACTCATTCGCTCCGTTTTCAAGTCCTACGATAAAACCTCCACCACCACCACCACCAGTTTCAGTTTCCAAGTGCCGGAGAAATACTCCAAAGAGCGCTTCTACGTGGTTTATGATAAGTCTGGACCCGTTCTCTCCACCATCCCCGAAGTTCCAGAGTTTGAGATCGGTGCACTCTCGCCGGAGATCTCTTCCCACGTCAGAAGTTTCAGAGCACCTTTCTTCAGTGAAAGAAACATGGCGAAGGAAATTTTGACACTTGATAATGCGACCACCTGCACATCTTGGAACCTTTCCGGTACCAGACTCGCTGCTGCTTCCGCTGATGGCACACTTTCAATCTTCGATTCCCGCGATCCATCTTCTTCTTCCTCCCTCCGCTCTACTTTCAAATCTAGGGTTCTCGAAGGAAAGATCGTGAAGATTGTTTGGGTTCCGCCAGAGTACGGTGATGCAGTCGCGTGTATTTCCGCCGATGGAATTGTGTCATTGTGGGAGGAGGTTGCAGAAGATTCGCAGTCTCTTCAGTGGAAGATGTGCAAAAGCTTTGGAGACAGTTCAGGCAAAGTCCTTGATCTTCAATTCGGGATCTCTTCGACTAGTTTGAAAATGGTTGCAGCATATTCAGATGGCAATATAAGAGTTTTTGAGCTCTTGGACCCCTTAGAACTGAGAAACTTCCAGCTTCAGGCTGAATTTCAAAATGTTATCGAGTCGGTGTCTGCATTTGGAAAGGCTTCGTGCCTCTCTGCATCCATATCTTGGAATCTACAAAAGGGTGGAAGCCAGGAATCAAGCTTCATTGTAGGTTTTAATTCAAATACATCAGAGCTTAATTCTTCGAAGGTATGGGAATTTGATCAGGCTCATCAAAGATGGCTTCCGGTAGCGGAATTGGCACTACCTGAAGACAAGGGTGATCAGGTTTATGCTGTTGCATGGGCACCAAATATTGGCAGACCGTATGAGATCATAGCTGTTGCAACTCACAAGGGACTTGCAATATGGCATCTTGGATTGAACCCTGACCATGATGGAAGACTCCCGGTAGAGCGAGTTGCACTACTCTCAGGTCACCAGGGCATGGTGTGGCAAATGGAATGGGATATGAGTGGAATGACGTTGGCTACTACAGGGCAAGATGGAATGGTCCGATTATGGCAGTCTAATCTCAATGGCGTTTGGCATCAGCAAGCTGCATTTGAGCCCACTTCGTAG 1509 0.4732 MAQTRNEVTITEKLLATKSSSSSYSTNLWDCGSTLYDSFELNSFNRQLHSAIAKSPITRTLSMPHLPERSLHAFPVQPPPPSIAMPRKFFNFSRSFHKLIRSVFKSYDKTSTTTTTSFSFQVPEKYSKERFYVVYDKSGPVLSTIPEVPEFEIGALSPEISSHVRSFRAPFFSERNMAKEILTLDNATTCTSWNLSGTRLAAASADGTLSIFDSRDPSSSSSLRSTFKSRVLEGKIVKIVWVPPEYGDAVACISADGIVSLWEEVAEDSQSLQWKMCKSFGDSSGKVLDLQFGISSTSLKMVAAYSDGNIRVFELLDPLELRNFQLQAEFQNVIESVSAFGKASCLSASISWNLQKGGSQESSFIVGFNSNTSELNSSKVWEFDQAHQRWLPVAELALPEDKGDQVYAVAWAPNIGRPYEIIAVATHKGLAIWHLGLNPDHDGRLPVERVALLSGHQGMVWQMEWDMSGMTLATTGQDGMVRLWQSNLNGVWHQQAAFEPTS 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02395 502 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 453 485 - -
Vimu7g02395 502 Gene3D - 185 499 IPR015943 GO:0005515
Vimu7g02395 502 ProSiteProfiles Trp-Asp (WD) repeats profile. 453 485 IPR001680 GO:0005515
Vimu7g02395 502 PANTHER NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER 184 500 IPR037363 GO:0005198
Vimu7g02395 502 SUPERFAMILY WD40 repeat-like 184 485 IPR036322 GO:0005515
Vimu7g02395 502 SMART WD40_4 273 314 IPR001680 GO:0005515
Vimu7g02395 502 SMART WD40_4 177 213 IPR001680 GO:0005515
Vimu7g02395 502 SMART WD40_4 446 485 IPR001680 GO:0005515
Vimu7g02395 502 SMART WD40_4 220 263 IPR001680 GO:0005515
Vimu7g02395 502 SMART WD40_4 389 434 IPR001680 GO:0005515
Vimu7g02395 502 FunFam Nucleoporin SEH1 185 500 - -
Vimu7g02395 502 Pfam WD domain, G-beta repeat 453 484 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02395 Vimu-Chr7 20557306 20563325 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02395 K14299 - gmx:100780788 603.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02395 7 20557306 20563325 Vimu7g02395 7 20557306 20563325 ECH
Vimu7g02395 7 20557306 20563325 Vimu11g04507 11 66033617 66034186 PCT