Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02381 ATGGCATCGCGAGTCAGCATTGGCAACCTCACCGCCACCAAGCCACCGTATGTTATTAATTCACCTCGGTTTTGTTCACCGCATAAATCTTCTAACGCTCTTTCTCACCAAAACGCTGCGCAACACAACGACATCATGCTCAAAAGAACCGTGCTCGTAACCGGTGGAGCCGGATACATCGGAAGCCACACCGTTCTTCAGCTACTCCTCGGAGGTTTCGCAACCGTCGTCGTCGACAACCTCGACAATTCCTCCGAGGTTGCCATCCGAAGAGTCCGGGAACTCGCCGGCGAGTTTGGGAATAACCTATCCTTCCATAAGGTGGACCTACGGGACAGAGCGGCTCTAGAGCAAATTTTTGTTTCCACACAGTTTGATGCTGTCATACATTTTGCTGGACTGAAAGCAGTGGGAGAAAGTGTGCAAAAACCTTTACTATATTACAACAACAACTTGACTGGGACAATCACTCTATTGGAAGTCATGGCTGCCCATGGATGCAAAAAGCTTGTGTTCTCGTCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTTCCGTGTACAGAAGAGTTCCCTCTGTCAGCGATGAATCCATATGGCCGAACTAAGCTTATTATTGAAGAAATTTGTCGTGATGTCCACCAAGCGGAGCCAGATTGGAAAATAATATTGTTAAGGTATTTCAACCCCGTTGGTGCACACCCTAGTGGTTATATTGGGGAGGATCCTCGTGGAATTCCAAACAATCTCATGCCATTTGTTCAGCAAGTAGCAGTTGGCAGACGACCTGCGCTGACAGTTTTTGGAAATGATTATAATACAGTTGACGGCACTGGGGTTCGGGATTATATTCATGTTGTTGATTTAGCAGATGGGCACATTGCTGCTTTACTTAAACTAGACGAACCTAATATAGGTTGTGAGGTTTATAACCTGGGAACAGGAAAGGGAACATCGGTTTTGGAGATGGTTAGGGCTTTTGAAGCTGCATCTGGAAAGAAAATTCCTCTTGTGATGGCTGGCCGTAGACCTGGTGATGCTGAAATTGTTTATGCATCCACTAAAAAAGCGGAAAGAGAGCTTAAATGGAAGGCAAAATATGGCATTGATGAGATGTGCCGTGATCAATGGAATTGGGCTAGCAAAAACCCTTACGGCTATGAAGATCAGGAGGACTCCACAGATTAA 1188 0.4596 MASRVSIGNLTATKPPYVINSPRFCSPHKSSNALSHQNAAQHNDIMLKRTVLVTGGAGYIGSHTVLQLLLGGFATVVVDNLDNSSEVAIRRVRELAGEFGNNLSFHKVDLRDRAALEQIFVSTQFDAVIHFAGLKAVGESVQKPLLYYNNNLTGTITLLEVMAAHGCKKLVFSSSATVYGWPKEVPCTEEFPLSAMNPYGRTKLIIEEICRDVHQAEPDWKIILLRYFNPVGAHPSGYIGEDPRGIPNNLMPFVQQVAVGRRPALTVFGNDYNTVDGTGVRDYIHVVDLADGHIAALLKLDEPNIGCEVYNLGTGKGTSVLEMVRAFEAASGKKIPLVMAGRRPGDAEIVYASTKKAERELKWKAKYGIDEMCRDQWNWASKNPYGYEDQEDSTD 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02381 395 Pfam GDP-mannose 4,6 dehydratase 52 375 IPR016040 -
Vimu7g02381 395 Gene3D - 51 320 - -
Vimu7g02381 395 FunFam UDP-glucose 4-epimerase 51 244 - -
Vimu7g02381 395 CDD UDP_G4E_1_SDR_e 50 379 IPR005886 GO:0003978|GO:0006012
Vimu7g02381 395 NCBIfam UDP-glucose 4-epimerase GalE 51 385 IPR005886 GO:0003978|GO:0006012
Vimu7g02381 395 PRINTS Nucleotide sugar epimerase signature 281 296 - -
Vimu7g02381 395 PRINTS Nucleotide sugar epimerase signature 307 322 - -
Vimu7g02381 395 PRINTS Nucleotide sugar epimerase signature 77 93 - -
Vimu7g02381 395 PRINTS Nucleotide sugar epimerase signature 346 363 - -
Vimu7g02381 395 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 46 388 IPR036291 -
Vimu7g02381 395 PANTHER UDP-GLUCOSE 4-EPIMERASE 48 392 - -
Vimu7g02381 395 Gene3D - 239 380 - -
Vimu7g02381 395 FunFam UDP-glucose 4-epimerase 4 323 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02381 Vimu-Chr7 20447616 20451869 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02381 50 364 Miscellaneous Gene Families AT4G00110 27.628 6.92e-21 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02381 K01784 - gmx:100792137 709.909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02381 7 20447616 20451869 Vimu7g02381 7 20447616 20451869 ECH