Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02380 ATGGATAACCTAATTTCTTTGGTGAACAAAATCCAGAGAGCTTGCACCGCTTTAGGCGATCATGGCGAAGCAAGTGCGTTGCCGACTCTCTGGGACTCTCTTCCCGCCATAGCTGTCGTCGGTGGCCAGAGCTCTGGAAAGTCTTCAGTGCTTGAAAGTGTTGTTGGCAAGGATTTCTTACCTCGTGGATCGGGAATTGTTACCCGGCGACCCCTTGTTTTGCAGCTTCACAAGATTGAGGAGGGTGCCAGAGAGTATGCTGAATTTCTTCACCTTCAAAGGAAGAGGTTCACCGATTTCGTTGTTAACTTGACACTCATTGATCTTCCTGGGCTTACAAAGGTAGCTGTAGAGGGCCAACCAGATAGCATTGTCCAAGATATTGAGAATATGGTTCGCTCCTACATTGAGAAGGACTCTGCTGGAACAAAATTTGCAAGACAGCATATTACATTAGCTTTCCTGCCACAAATTCCAAACTGTATAATTTTGGCAATTACACCAGCCAATCAAGATCTTGCAACATCGGATGCAATTAAAATATCCCGTGAAGTGGATCCCACTGGAGAAAGAACATTTGGAGTCTTGACAAAGATTGATCTTATGGACAAGGGTACTGATGCTGTTGATATGTTGGAAGGGAGAGCTTATAGATTAAAATATCCCTGGGTTGGTGTTGTCAATAGATCGCAAGCGGATATTAACAAGAACGTTGACATGATTGCTGCTAGACGTAGAGAACGTGAATATTTTTCTAATACCCCTGAATATAAGCACCTTGCTCACAGAATGGGTTCTGAGCATCTAGCAAAGATGCTTTCAAAGCAATTGGAGGCAGTAATCAAGTCCAAAATTCCTGGTATTCAGTCTCTTATCAGTAAAACAATTGCTGAACTTGAAGCTGAACTGAGTCGTCTGGGAAAGCCTGTTGCAGCTGATGAAGGGGGAAAGTTGTATTCAATCATGGAAATATGCCGCTCATTTGATCAAATATTCAAAGAACATCTCGATGGCGTGCGACCTGGAGGTGATAAAATTTATAATGTCTTTGACAATCAGCTGCCTGCTGCTTTAAAAAGGCTGCAGTTTGATAAACAACTTTCAATGGAAAATATAAGAAAACGTATTACAGAGGCTGATGGGTATCAACCTCATCTAATAGCTCCAGAACAAGGATATCGCCATCTCATTGAATCTTCTCTAACTACTGTCAGGGGTCCAGCTGAGGCAGCTGTTGATGCGGACTTGAAGCAATATCCTGGTCTACGTGTTGAGGTTGGAAATGCAGCCATCGATTCACTAGAAAAAATGAGAGAGGAAAGCAAAAAAGCAGCACTACAGCTAGTTGATATGGAGTGTGGCTATTTGACGGTTGATTTCTTCCGAAAGATTCCTCAAGATGTTGACAAGGGTGGCAATCCCACACATTCAATTTTTGATAGATATAACGATTCGTATCTTAGGCGAATCGGAACCAATGTTCTGTCTTATGTCAATATGGTCTGTGCAAGTCTTCGGCATTCAATTCCCAAGTCAATTGTCTATTGTCAAGTGCGGGAAGCCAAACGAGGCCTTCTCGATCACTTCTTCACTGAACTAGGCAAAATTGAGCCCAAGCGTCTGTCCTCATTGCTCAATGAGGATCCTGCAATAATGGAAAGACGAAGTGCCCTTGCAAAGAGGCTTGAGTTATATCGGAGTGCACAAGCTGAGATCGATGCAGTTGCATGGTCTAAGTAG 1740 0.431 MDNLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIEEGAREYAEFLHLQRKRFTDFVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKDSAGTKFARQHITLAFLPQIPNCIILAITPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAVDMLEGRAYRLKYPWVGVVNRSQADINKNVDMIAARRREREYFSNTPEYKHLAHRMGSEHLAKMLSKQLEAVIKSKIPGIQSLISKTIAELEAELSRLGKPVAADEGGKLYSIMEICRSFDQIFKEHLDGVRPGGDKIYNVFDNQLPAALKRLQFDKQLSMENIRKRITEADGYQPHLIAPEQGYRHLIESSLTTVRGPAEAAVDADLKQYPGLRVEVGNAAIDSLEKMREESKKAALQLVDMECGYLTVDFFRKIPQDVDKGGNPTHSIFDRYNDSYLRRIGTNVLSYVNMVCASLRHSIPKSIVYCQVREAKRGLLDHFFTELGKIEPKRLSSLLNEDPAIMERRSALAKRLELYRSAQAEIDAVAWSK 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02380 579 Pfam Dynamin GTPase effector domain 483 575 IPR003130 GO:0003924|GO:0005525
Vimu7g02380 579 Pfam Dynamin central region 207 457 IPR000375 -
Vimu7g02380 579 Pfam Dynamin family 37 98 IPR045063 -
Vimu7g02380 579 Pfam Dynamin family 101 199 IPR045063 -
Vimu7g02380 579 PANTHER DYNAMIN 101 575 IPR022812 -
Vimu7g02380 579 ProSiteProfiles GED domain profile. 487 579 IPR020850 -
Vimu7g02380 579 Gene3D - 102 295 IPR027417 -
Vimu7g02380 579 SMART GED_2 482 575 IPR003130 GO:0003924|GO:0005525
Vimu7g02380 579 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 31 286 IPR030381 GO:0005525
Vimu7g02380 579 PRINTS Dynamin signature 210 229 IPR022812 -
Vimu7g02380 579 PRINTS Dynamin signature 34 52 IPR022812 -
Vimu7g02380 579 PRINTS Dynamin signature 168 186 IPR022812 -
Vimu7g02380 579 PRINTS Dynamin signature 187 203 IPR022812 -
Vimu7g02380 579 PRINTS Dynamin signature 59 76 IPR022812 -
Vimu7g02380 579 Gene3D Dynamin, middle domain 312 544 - -
Vimu7g02380 579 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 294 IPR027417 -
Vimu7g02380 579 SMART dynamin_3 1 237 IPR001401 GO:0003924|GO:0005525
Vimu7g02380 579 CDD DLP_1 33 286 IPR001401 GO:0003924|GO:0005525
Vimu7g02380 579 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 60 69 IPR019762 -
Vimu7g02380 579 Gene3D - 1 101 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02380 Vimu-Chr7 20439790 20444546 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02380 - - gmx:100819043 1024.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02380 7 20439790 20444546 Vimu7g02380 7 20439790 20444546 ECH
Vimu7g02380 7 20439790 20444546 Vimu11g04527 11 66165281 66172410 PCT