Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02378 ATGGGGAGAGTGGTCGTGGGGGTGGCGGTGACGGTGGCTGTGGCGACATGTGCGGTTGCGGCGGTGGTGGTGGGGCGGAGAGTGAAAAGCCGGAGGAAGTGGAAGAAAGTGGCGAATGTGGTGAGGGAACTGGAAGAAGGGTGCGACACTAGGGTTGGTAGGTTAAGGCAAGTGGTGGATGCCATGGCCGTGGAGATGCACGCCGGGTTGGCATCTGAAGGTGGCTCCAAGCTCAAAATGCTTCTCACATTCGTCGATAATCTCCCAAATGGGACCGAGAAAGGAACATATTATGCACTTCATCTCGGGGGTACAAATTTTAGGGTTTTGCGGGTTCAATTAAGTGGTCAACCAACTTCAGACTTGGAACATGAAGTAGAACGACAACCCATTCCCCAAAATGTAATGACCAGCACAAGCGAGGACCTCTTTGATTTTATTGCATCTTCATTGAAGGATTTCATTGCCAAAGAAGGAGATGGTTCCAATATTTCACAGGGCAGAAGAGAACTTGGATTTACATTCTCCTTTCCTGTGAAGCAAATGTCTGTTTCCTCTGGCATTTTAATCAAATGGACGAAAGGGTTTTCCATTGTAGACATGGTAGGAAGAGATGTTGCAGCATGTTTGCAAGAAGCCTTGATACGGAATGGCCTAGATGTTCGGGTAGCTGCCTTGGTTAATGACACTGTTGGAACATTAGCAGTCGGGCATTATCACGATCCAGATACAGTTGCTGCAATTATAATTGGTACTGGTACAAATGCCTGTTATTTGGAACGAGTTGATGCTATTATCAAGTGCCAAGGTCTTCTTATGTCATCTGGCCGCATGGTTGTCAACATGGAATGGGGGAACTTTTGGTCATCTCACTTGCCAAGAACATCGTATGACATTGATTTGGATGCTGCTAGTCCTAATCCAAATGATCAGGGTTTTGAGAAAATGATATCTGGAATGTATCTTGGTGATTTAGTGAGGAGAGTAATTCTCAGGATGACATTAGAGTCCGATATGTTTGGACCTATTTCTCCAAAGCTTTCAATGCCTTTCATACTGAGGACTCCTTTGATGGCTGCCATGCATGAGGATAACACGCCTGACTTGAGAGAAGTAGCGAGAATCCTTAATGATATATTTGAGATCCCTGATGTTCCTTTGAAGGCAAGAAAAATAGTGGTGAAGGTGTGTGATGTGGTGACTCGTAGAGCTGCTCGATTGGCAGCTGCTGGCATTGTTGGTATCTTGAAAAAGATTGGTAGGGACGGGAGTGGTGGCATCACAGGTGGACGGAGTAGAAGTGATATGAAAATGAAAAGAACAGTGGTGGCAATTGAAGGGGGATTGTATTCTAAATATACATTGTTTAGGGAGTACTTGCGTGATGCTCTAAATGAAATATTGGGGGAAGATATTGCCAAGCACGTCATTCTAAAGGTCACCGAAGATGGATCTGGCATTGGGGCCGCACTGCTTGCTGCCTCCTATTCATCCTAA 1497 0.4562 MGRVVVGVAVTVAVATCAVAAVVVGRRVKSRRKWKKVANVVRELEEGCDTRVGRLRQVVDAMAVEMHAGLASEGGSKLKMLLTFVDNLPNGTEKGTYYALHLGGTNFRVLRVQLSGQPTSDLEHEVERQPIPQNVMTSTSEDLFDFIASSLKDFIAKEGDGSNISQGRRELGFTFSFPVKQMSVSSGILIKWTKGFSIVDMVGRDVAACLQEALIRNGLDVRVAALVNDTVGTLAVGHYHDPDTVAAIIIGTGTNACYLERVDAIIKCQGLLMSSGRMVVNMEWGNFWSSHLPRTSYDIDLDAASPNPNDQGFEKMISGMYLGDLVRRVILRMTLESDMFGPISPKLSMPFILRTPLMAAMHEDNTPDLREVARILNDIFEIPDVPLKARKIVVKVCDVVTRRAARLAAAGIVGILKKIGRDGSGGITGGRSRSDMKMKRTVVAIEGGLYSKYTLFREYLRDALNEILGEDIAKHVILKVTEDGSGIGAALLAASYSS 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02378 498 SUPERFAMILY Actin-like ATPase domain 243 496 IPR043129 -
Vimu7g02378 498 Gene3D - 61 482 - -
Vimu7g02378 498 PRINTS Hexokinase family signature 98 114 - -
Vimu7g02378 498 PRINTS Hexokinase family signature 246 260 - -
Vimu7g02378 498 PRINTS Hexokinase family signature 393 415 - -
Vimu7g02378 498 PRINTS Hexokinase family signature 223 239 - -
Vimu7g02378 498 PRINTS Hexokinase family signature 311 333 - -
Vimu7g02378 498 PRINTS Hexokinase family signature 171 196 - -
Vimu7g02378 498 Pfam Hexokinase 246 494 IPR022673 GO:0005524|GO:0005975|GO:0016773
Vimu7g02378 498 PANTHER HEXOKINASE 6 495 IPR001312 GO:0001678|GO:0004396|GO:0005524|GO:0005536|GO:0005975
Vimu7g02378 498 CDD NBD_sugar-kinase_HSP70_actin 99 260 - -
Vimu7g02378 498 Gene3D - 83 493 - -
Vimu7g02378 498 Pfam Hexokinase 41 239 IPR022672 GO:0005524|GO:0005975|GO:0016773
Vimu7g02378 498 FunFam Phosphotransferase 221 482 - -
Vimu7g02378 498 SUPERFAMILY Actin-like ATPase domain 25 241 IPR043129 -
Vimu7g02378 498 ProSitePatterns Hexokinase domain signature. 171 196 IPR019807 GO:0004396|GO:0005524|GO:0006096
Vimu7g02378 498 FunFam Phosphotransferase 83 250 - -
Vimu7g02378 498 ProSiteProfiles Hexokinase domain profile. 35 494 IPR001312 GO:0001678|GO:0004396|GO:0005524|GO:0005536|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02378 Vimu-Chr7 20422169 20425912 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02378 K00844 - gmx:100819464 844.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02378 7 20422169 20425912 Vimu7g02378 7 20422169 20425912 ECH