Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02325 ATGGTGAGTGTGTCGGAGATTCGTCAGGCTCAAAGGGCGGAAGGCCCAGCAACTATCCTTGCTATCGGAACTGCAACTCCACCCAACTGTGTTGATCAGAGCACTTATCCTGACTATTACTTCAGAATCACAAACAGCGAGCACATGACCGACCTTAAGGAGAAGTTCCAGCGCATGTGCGACAAGTCTATGATCAAGAAGAGATACATGCACGTGACGGAGGAGATCCTGAAAGAGAATCCTAACATGGCTGCTTACATGGCACCTTCTTTGGATGCCAGACAGGACATAGTGGTGGTAGAGGTACCAAAGCTCGGGAAAGAGGCTGCAGTGAAGGCCATAAAGGAGTGGGGGCAGCCAAAGTCAAAGATCACACACTTGATCTTTTGCACCACCAGTGGTGTGGACATGCCTGGTGCTGATTACCAACTCACCAAACTCCTCGGACTTCGCCCCTATGTGAAGAGGTACATGATGTACCAACAGGGGTGCTTTGCGGGAGGCACGGTTCTTCGATTGGCTAAGGATTTGGCTGAGAACAACAAGGGTGCTCGTGTCCTTGTTGTGTGTTCTGAGATCACTGCAGTCACCTTCCGTGGCCCAAGTGACACTCACTTAGACAGCCTTGTCGGACAGGCACTGTTTGGAGATGGAGCAGCTGCTGTGATCGTTGGTTCTGACCCAATTCCACAGATTGAGAAACCATTGTTTGAGCTGGTTTGGACTGCACAGACCCTTGCTCCAGACAGTGAAGGTGCGATTGATGGACACCTTCGTGAAGTTGGACTCACCTTTCACCTCCTTAAGGATGTTCCCGGGATTGTCTCAAAGAACATTGGGAAAGCACTTTTTGAGGCCTTCAACCCATTGAACATCTCTGATTACAACTCCATCTTCTGGATTGCACACCCTGGTGGGCCTGCAATTCTTGATCAAGTTGAACAAAAGTTGGGTCTGAAACCAGAAAAGATGAAGGCCACTAGAGATGTGCTTAGTGATTATGGGAACATGTCAAGTGCATGTGTGCTTTTTATCTTGGATGAAATGAGGAGGAAATCAGCTGAAAATGGACTAAAAACCACGGGTGAAGGACTTGAATGGGGTGTCCTTTTTGGTTTTGGACCAGGACTTACTATCGAGACCGTTTGGGGTACACGTGTCAACCGTCCGTTCTCCCCTGATGAGTGGGAGACAAACTCTGTCAAATTTTTAATTCCCTTCCCTCGTAATCCGTGCAGTATCGGCGTAGCAGAGAAACCGCAGGGAGTGGAAGTCAGGTGTCACGTTGGAACTGGCCGACCGTTCGGACTGGAGGCAGTATATAAGGTAGGAATGAAATCTCACGCCACTATTGCATGCAATCTTCTTCTTCTTCCTCAAACTCAACCTTCTAAAAATCTCAAACTCTCCTCCTTCTCTCTAAAACCTCCCAACCTTCTCTATAAATTTCTAACCCATTTACTGTTCCGATCACCCTTCAGATCACACCTGAAGACTCCTGGTGGTCTCCTCTCTCACTTGAACGTCCGGTTTCTAGTTTGGAAACTGAATTTGAAAAGCCTTAGAAGGGATAGTTCCTATCAACCTACTTTCAAGACTTAG 1602 0.4782 MVSVSEIRQAQRAEGPATILAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFQRMCDKSMIKKRYMHVTEEILKENPNMAAYMAPSLDARQDIVVVEVPKLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAAVIVGSDPIPQIEKPLFELVWTAQTLAPDSEGAIDGHLREVGLTFHLLKDVPGIVSKNIGKALFEAFNPLNISDYNSIFWIAHPGGPAILDQVEQKLGLKPEKMKATRDVLSDYGNMSSACVLFILDEMRRKSAENGLKTTGEGLEWGVLFGFGPGLTIETVWGTRVNRPFSPDEWETNSVKFLIPFPRNPCSIGVAEKPQGVEVRCHVGTGRPFGLEAVYKVGMKSHATIACNLLLLPQTQPSKNLKLSSFSLKPPNLLYKFLTHLLFRSPFRSHLKTPGGLLSHLNVRFLVWKLNLKSLRRDSSYQPTFKT 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02325 533 FunFam Chalcone synthase 2 1 235 - -
Vimu7g02325 533 SUPERFAMILY Thiolase-like 235 383 IPR016039 GO:0016746
Vimu7g02325 533 ProSitePatterns Chalcone and stilbene synthases active site. 156 172 IPR018088 GO:0009058|GO:0016746
Vimu7g02325 533 SUPERFAMILY Thiolase-like 1 233 IPR016039 GO:0016746
Vimu7g02325 533 Gene3D - 236 388 IPR016039 GO:0016746
Vimu7g02325 533 Pfam Chalcone and stilbene synthases, C-terminal domain 238 382 IPR012328 -
Vimu7g02325 533 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 4 382 IPR011141 GO:0009058|GO:0016747
Vimu7g02325 533 Gene3D - 1 235 IPR016039 GO:0016746
Vimu7g02325 533 CDD CHS_like 16 383 - -
Vimu7g02325 533 FunFam Chalcone synthase 1 236 388 - -
Vimu7g02325 533 Pfam Chalcone and stilbene synthases, N-terminal domain 5 228 IPR001099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02325 Vimu-Chr7 20029959 20032094 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02325 150 382 Miscellaneous Gene Families AT3G52160 28.814 3.21e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02325 K00660 - gmx:100170701 745.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02325 7 20029959 20032094 Vimu7g02325 7 20029959 20032094 ECH