Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02174 ATGGAGGGAATCGAAGCCGTAGCGAATGGTGATGGCGACGGAGATGGTGGCGATCGTCCATGGCAATCTTACCACACTGTTTACACAACCGCTAAAGCAGGAATGGAAGGGGTTGACAAGGAGAAAGTTCAGAGAGTAGTTTACGAAATGAGTAAAGGATCCAAATATTTTCAAAACGAGGAACGCAAGGAGGCTTTTATTAACCAGAAAATTCAGAACTTGCGAATTCAGTGTGCTAAGCTCGCACAAGCAGACCTGGCCCACTATCGCAAGGTGGCTGATAGAAGAATTGTTGAGCTAGAAGCTTCGCGTGACCTTTCGAGGATTTGGTTACATGTAGATATGGATGCTTTCTATGCTGCTGTGGAGACTTTAAGTAATCCTACATTACAGGGCAAGCCAATGGCTGTTGGGAGCATGTCCATGATATCCACTGCCAACTATGAGGCCCGAAAATTTGGGGTTCGTGCTGCCATGCCTGGGTTCATTGCACGTAAGCTATGTCCAGAATTAATCTTTGTCCCAACAGATTTCAAGAAGTATACTTACTATAGTGATTTGACTAGAAAAGTTTTCCGGATATACGACCCCAATTTCATTGCTGGTAGCCTTGACGAAGCATACCTTGATATAACTGAAGTTATCAAAGAAAGGAATGTCAAAAGTGAAGAAATTGCCCAAGAACTCAGAGCTGGTGTTTATGAAGAGACCGGTCTCACATGTAGTGCTGGAGTGGCACCAAATCGCTTACTTGCCAAGGTTTGTTCAGACATAAACAAGCCAAATGGACAGTATGTTTTGCCAAATGACCGCATGGCTGTTATGACCTTTGTATCCTCGCTTCCTATCAGAAAGATTGGGGGCATTGGTAAGGTCACAGAACATATTTTAAAGGGAGTTTTTGAAATTAACACATGTGAGCAGATACTGGAGAAGAGTAGCTACCTTTATGCACTTTTCTCTCAGCCAACAGCAGGTTTAGGTCTTGGGCAAACAGATTCTCCCCAAGTAAGATTTCGGAAAAGTATTAGTAATGAAAGAACATTTTCTGCCACTGAAGATGAGGTGCTATTGCATAAAAAGTTAGTGGAGCTTGCTGAAATGCTATCGGCTGACATGCAGAAAGAGGGTCTGTGTGGGCGAACATTGACTCTTAAACTGAAAACTGCTTCTTTTGAGGTTCGGACCAGAGCTGTGACTTTACAAAAGTACATCAGCTCAACTGAGGATATCTTGAAGCATGCTAAAAAGTTGCTAAAAGCTGAACTTCCTATTTCAGTAAGATTGATGGGCCTTAGAGTATCTCAGTTTAATGGAGACAAATGTAGTGCCACGCCTGATCCTACACAGAAGACCATTACCAACTTCATTACTTCGGGAGATGTCAATAGAAATTGTAGTTCTTTTCCAGATGTTGCAGATCGTGACTTTGTCAGTGATGCAAAAACCAATCTTTCCGTTGACAATCAGCAGACGAGTCAACTTGATTGGAGAGATCCTTTTGTTGGTAACTATTTGTCAGATGGAGATTACCAAAGTTGTATTCTCCAGAAAAATGATGGTATAGAAGAGGTACAAACACCTAGTAAGGATGCTACAAGTTCTCACCACAGTGGATTTACAGAAGCGCTGGGATCTACTTCTTTCCAGGAGCAGTTTGAAGGCATAAATGTGCTGAATGAATCTAAGCTCCTGGAACTTAATTCTTGTTCTCAGGAGACGACAATGTTGTGGCTGAATGACTACAAATGTTCACTTTGTGGAATAGAACTACCTCCAAGTTTTTTTGAGGAAAGATTGGAGCACTCTGATTTTCATCTTGCTGAAAAGCTTCAAAAGGAAGAATCTAGGATTCACCAACCATGTGTTCCTAGTGGAAGTCGGGGTCAAAAGGATGGAATCACAAGACAAAGCAAATCTAAGAAGCAAAAGTTGTCGCAGAAAGAAGGCAAATTTACACCCATTGATTCTTTTTTTGTTAAAAAGTAA 1989 0.4163 MEGIEAVANGDGDGDGGDRPWQSYHTVYTTAKAGMEGVDKEKVQRVVYEMSKGSKYFQNEERKEAFINQKIQNLRIQCAKLAQADLAHYRKVADRRIVELEASRDLSRIWLHVDMDAFYAAVETLSNPTLQGKPMAVGSMSMISTANYEARKFGVRAAMPGFIARKLCPELIFVPTDFKKYTYYSDLTRKVFRIYDPNFIAGSLDEAYLDITEVIKERNVKSEEIAQELRAGVYEETGLTCSAGVAPNRLLAKVCSDINKPNGQYVLPNDRMAVMTFVSSLPIRKIGGIGKVTEHILKGVFEINTCEQILEKSSYLYALFSQPTAGLGLGQTDSPQVRFRKSISNERTFSATEDEVLLHKKLVELAEMLSADMQKEGLCGRTLTLKLKTASFEVRTRAVTLQKYISSTEDILKHAKKLLKAELPISVRLMGLRVSQFNGDKCSATPDPTQKTITNFITSGDVNRNCSSFPDVADRDFVSDAKTNLSVDNQQTSQLDWRDPFVGNYLSDGDYQSCILQKNDGIEEVQTPSKDATSSHHSGFTEALGSTSFQEQFEGINVLNESKLLELNSCSQETTMLWLNDYKCSLCGIELPPSFFEERLEHSDFHLAEKLQKEESRIHQPCVPSGSRGQKDGITRQSKSKKQKLSQKEGKFTPIDSFFVKK 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02174 662 SUPERFAMILY DNA/RNA polymerases 85 323 IPR043502 -
Vimu7g02174 662 MobiDBLite consensus disorder prediction 634 649 - -
Vimu7g02174 662 MobiDBLite consensus disorder prediction 616 662 - -
Vimu7g02174 662 ProSiteProfiles Zinc finger UBZ3-type profile. 577 614 IPR041298 -
Vimu7g02174 662 Coils Coil 57 77 - -
Vimu7g02174 662 Gene3D - 127 175 - -
Vimu7g02174 662 Gene3D - 115 265 IPR043128 -
Vimu7g02174 662 Gene3D - 28 114 - -
Vimu7g02174 662 Pfam Ubiquitin-Binding Zinc Finger 581 614 IPR041298 -
Vimu7g02174 662 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 338 435 IPR036775 GO:0003684|GO:0006281
Vimu7g02174 662 Gene3D - 338 443 IPR036775 GO:0003684|GO:0006281
Vimu7g02174 662 FunFam DNA polymerase kappa subunit 27 117 - -
Vimu7g02174 662 MobiDBLite consensus disorder prediction 1 21 - -
Vimu7g02174 662 FunFam Polymerase (DNA directed) kappa 120 172 - -
Vimu7g02174 662 FunFam DNA polymerase IV 337 444 - -
Vimu7g02174 662 FunFam DNA polymerase kappa subunit 170 265 - -
Vimu7g02174 662 PANTHER DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER 21 660 - -
Vimu7g02174 662 ProSiteProfiles UmuC domain profile. 110 290 IPR001126 GO:0006281
Vimu7g02174 662 PIRSF DNA_pol_eta 102 224 - -
Vimu7g02174 662 PIRSF DNA_pol_eta 221 316 - -
Vimu7g02174 662 PIRSF DNA_pol_eta 363 662 - -
Vimu7g02174 662 Pfam impB/mucB/samB family C-terminal domain 340 440 IPR017961 GO:0003684|GO:0006281
Vimu7g02174 662 Gene3D - 266 332 - -
Vimu7g02174 662 CDD PolY_Pol_IV_kappa 111 437 IPR022880 GO:0003887
Vimu7g02174 662 Pfam impB/mucB/samB family 113 257 IPR001126 GO:0006281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02174 K03511 - gmx:100816973 1118.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02174 7 19204815 19208791 Vimu7g02174 7 19204815 19208791 ECH