Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02172 ATGGGTATCCGATCGGTGTTTGACGGCGGCGAGCTGAGAAGAGAATTTGAGAAGAACGGAATTGACGGAAAATTCGTTGGGATAATATGGAAGCATGTGATCGGAAATAATGCGAAGGGAGAAAGTGGAGAATGGAATTGGGAGAAACAAGTGCCATCGCTGCCATCTTCAGCGTACTCTGTCCTTCGTTCCAACTTCGGAGGAACGAAACCTCTCTCTTCTTCTCTTCACTCCGTTTTCCACTCTTCCGACAACCTCACGTCCAAGCTCCTCATCAAGCTCCACAACGGAGAATTCGTGGAGGCTGTGATAATGAGATACGATACTCGTTTGGGAAAATACGCCGGCAAACCGCGTCCCGGTGGGCTACGAGCAACTTTGTGTATTTCATCTCAGGTAGGATGCAAAATGGGTTGCAAATTCTGTGCCACTGGATCCATGGGATTCAAAAATAACCTATCTTCCGGGGAAATTGTGGAACAGCTCGTCCATGCTTCTGCTTTCTCACAAATCCGTAATGTTGTCTTCATGGGAATGGGAGAGCCTCTCAACAACTATTCTGCTGTGGTAGAAGCGGTTCGCATCATGACTGGATTGCCATTTCAGTTGTCCTTGAAAAGGATTACCGTATCAACGGTTGGTATCATCCATGCTATCAACAAGCTTCACAATGACCTGCCTGGTTTGAACTTGGCAGTCTCTCTGCATGCACCAGCCCAAGACATCCGTTGTCAGATAATGCCTGCTGCTCGTGCTTTTCCTTTGGAAAAACTTATGAATTCACTGCAAGAATATCAAAGAAAAAGTCTGCAGAAAATACTGATTGAATACATAATGCTTGACGGGGTGAATGATGAAGAGCAGCATGCCCACCAATTGGGAAAACTATTAGAGACATTTCAAGTGGTAGTGAACTTAATACCTTTCAACCCTATCGGTACCTTGAGTCAATTCAAACCTACCAGTGAGCAGAAAGTCTCAAATTTTCAGAAAATTCTCAGAGGTACATATAATATTCGAACAACAGTTAGGAAGCAGATGGGTCAAGACATAAGTGGTGCTTGTGGACAATTGGTGGTTAACATACCAGACAAGTCTCTTGCCCGTGCAGAACCCCTCACAGACATAGAAGATCTTGTTATTTGA 1146 0.4468 MGIRSVFDGGELRREFEKNGIDGKFVGIIWKHVIGNNAKGESGEWNWEKQVPSLPSSAYSVLRSNFGGTKPLSSSLHSVFHSSDNLTSKLLIKLHNGEFVEAVIMRYDTRLGKYAGKPRPGGLRATLCISSQVGCKMGCKFCATGSMGFKNNLSSGEIVEQLVHASAFSQIRNVVFMGMGEPLNNYSAVVEAVRIMTGLPFQLSLKRITVSTVGIIHAINKLHNDLPGLNLAVSLHAPAQDIRCQIMPAARAFPLEKLMNSLQEYQRKSLQKILIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGTLSQFKPTSEQKVSNFQKILRGTYNIRTTVRKQMGQDISGACGQLVVNIPDKSLARAEPLTDIEDLVI 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02172 381 Gene3D Aldolase class I 75 366 IPR013785 -
Vimu7g02172 381 Pfam Radical SAM superfamily 130 288 IPR007197 GO:0003824|GO:0051536
Vimu7g02172 381 PANTHER 23S RRNA METHYLTRANSFERASE 7 366 IPR040072 -
Vimu7g02172 381 CDD Radical_SAM 134 335 - -
Vimu7g02172 381 NCBIfam 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 78 358 IPR027492 GO:0030488|GO:0070475
Vimu7g02172 381 ProSiteProfiles Radical SAM core domain profile. 121 350 IPR007197 GO:0003824|GO:0051536
Vimu7g02172 381 SFLD adenosine C2 methyltransferase (RlmN-like) 81 365 IPR004383 GO:0006364|GO:0008173
Vimu7g02172 381 SFLD methyltransferase (Class A) 81 365 - -
Vimu7g02172 381 SUPERFAMILY Radical SAM enzymes 126 325 - -
Vimu7g02172 381 Pfam 4Fe-4S single cluster domain 134 218 - -
Vimu7g02172 381 PIRSF Cfr 11 374 IPR004383 GO:0006364|GO:0008173
Vimu7g02172 381 FunFam 23S rRNA methyltransferase 74 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02172 Vimu-Chr7 19187123 19189229 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02172 - - gmx:100804869 646.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02172 7 19187123 19189229 Vimu7g02172 7 19187123 19189229 ECH