Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02170 ATGAAGGTTTGGAGATGGTTGCTGAGTTTGGTTGTGGGGTTATTGTTGCCTTTGTCGATAATGGGTCGATTCGTGGTGGAGAAGAACAGCCTGAGAGTGGCGTCGCCGGAGAAAATAAGAGGCACTCACGACAGTGCCATTGGGAACTTCGGCATCCCTCAATACGGTGGTAGCATGGCGGGGAACGTCGTTTACCCAAAGGATAACAAGAAAGGTTGTAAAGAGTTTGATGAGTCTGGGATTTCCTTCAAATCAAGTCCCGGTGCTCTTCCCACCATTGTTCTGCTCGATCGCGGAAGTTGCTTCTTTGCATTGAAGGTCTGGAATGCTCAGAAGGCTGGAGCTTCTGCAGTTCTTGTTGCAGATGATGTTGAGGAGCCCTTGATAACTATGGACACACCTGAGGAGGATGGCTCGTCTGCCAAATATGTGGAGAACATAACTATACCATCTGCTCTTGTTGGAAAAAGTTTTGGTGAAAAGTTAAAGGATGCCATAAGTGGTGGGGACATGGTCAACGTAAATCTTGATTGGAGAGAGTCTGTCCCTCACCCAGATGATCGTGTGGAGTATGAGTTGTGGAGCAACAGCAATGATGAGTGTGGAGTTAAGTGTGACATGTTGATGGAATTTGTGAAGGATTTCAAGGGCGCAGCACAGATACTAGAGAAAGGCGGTTACACTCAGTTTACACCCCATTATATAACTTGGTACTGTCCTCATGCTTTCACATTGAGCAAACAGTGCAAGTCTCAATGCATAAATCATGGAAGATATTGTGCTCCAGACCCTGAGCAGGACTTCAGCACAGGTTATGACGGGAAAGATGTGGTTGTTGAAAATTTAAGGCAGCTATGTGTTTTCAAGGTGGCAAATGAAACTGGAAAGCCTTGGGTCTGGTGGGACTATGTCACTGATTTTCAAATTAGATGCCCCATGAAGGATAAAAAGTACAATAAGGAATGTGCAGATGCTGTTATTAAATCACTGGGTCTTAATGTTGAAAAGATTGGAAAATGCATGGGCGATCCAGAAGCTGATGCTGATAATCCTGTCTTGAAAGAAGAGCAAGATGCCCAAATTGGAAAGGGATCACGAGGTGATGTTACCATCTTGCCTACTCTCGTGGTCAATAACCGACAATATCGAGGAAAATTGGAGAAAGGGGCTGTTCTAAAGGCTATATGTTCTGGGTTTGAGGAAACTACTGAACCAGCTGTTTGCCTGAGCACTGATGTGGAGACAAATGAGTGCTTGACAAACAATGGTGGTTGTTGGCAGGATACAGCAGCTAACATCACTGCGTGCAAGGATACATTCCGTGGTAGAGTATGTGAATGCCCCCTGGTTGACGGTGTTCAATTCAAGGGAGATGGTTATACATCTTGTGAAGCAAGAGGACTTGGACGTTGCAAGATAAACAATGGAGGATGTTGGCATGATGCCCGAAATGGACATGCATTTTCTGCTTGTTTGGATAACGGAGGGGTAAAATGCCAGTGTCCCACAGGATTCAAAGGTGATGGTGTCAAAAGTTGTGAAGATATTGACGAATGCAGAGAGAAGAAGGCTTGTCAGTGCCCTGAATGTAGCTGCAAGAATACATGGGGCAGCTATGACTGCAGTTGTAGTGGAGATCTCCTATATATGAGGGACCACGATACCTGCATAAGTAAAATTGGAAGTCAGGGAAGATCTACTTGGGCTGCTTTTTGGTTGATTCTACTTGGCGTGGTTATGATTTCTGGTGGGGCATTCCTAGTGTACAAGTATAGGATAAGGCAATACATGGATTCTGAAATCAGAGCAATCATGGCACAATATATGCCCCTGGACAGCCAAGCAGAAGTTCCAAATCATGTGAATGATGAAAGAACATGA 1881 0.4482 MKVWRWLLSLVVGLLLPLSIMGRFVVEKNSLRVASPEKIRGTHDSAIGNFGIPQYGGSMAGNVVYPKDNKKGCKEFDESGISFKSSPGALPTIVLLDRGSCFFALKVWNAQKAGASAVLVADDVEEPLITMDTPEEDGSSAKYVENITIPSALVGKSFGEKLKDAISGGDMVNVNLDWRESVPHPDDRVEYELWSNSNDECGVKCDMLMEFVKDFKGAAQILEKGGYTQFTPHYITWYCPHAFTLSKQCKSQCINHGRYCAPDPEQDFSTGYDGKDVVVENLRQLCVFKVANETGKPWVWWDYVTDFQIRCPMKDKKYNKECADAVIKSLGLNVEKIGKCMGDPEADADNPVLKEEQDAQIGKGSRGDVTILPTLVVNNRQYRGKLEKGAVLKAICSGFEETTEPAVCLSTDVETNECLTNNGGCWQDTAANITACKDTFRGRVCECPLVDGVQFKGDGYTSCEARGLGRCKINNGGCWHDARNGHAFSACLDNGGVKCQCPTGFKGDGVKSCEDIDECREKKACQCPECSCKNTWGSYDCSCSGDLLYMRDHDTCISKIGSQGRSTWAAFWLILLGVVMISGGAFLVYKYRIRQYMDSEIRAIMAQYMPLDSQAEVPNHVNDERT 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02170 626 SMART egfca_6 515 557 IPR001881 GO:0005509
Vimu7g02170 626 FunFam vacuolar-sorting receptor 1 408 464 - -
Vimu7g02170 626 CDD PA_VSR 49 176 - -
Vimu7g02170 626 Pfam PA domain 60 162 IPR003137 -
Vimu7g02170 626 Gene3D Laminin 408 464 - -
Vimu7g02170 626 PANTHER PROTEASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN 2 615 - -
Vimu7g02170 626 Gene3D Glutaredoxin 237 398 - -
Vimu7g02170 626 Gene3D Laminin 520 557 - -
Vimu7g02170 626 CDD EGF_CA 515 543 - -
Vimu7g02170 626 ProSitePatterns Calcium-binding EGF-like domain signature. 515 541 IPR018097 GO:0005509
Vimu7g02170 626 Gene3D - 21 185 - -
Vimu7g02170 626 Gene3D Laminin 469 519 - -
Vimu7g02170 626 FunFam Vacuolar-sorting receptor 1 21 185 - -
Vimu7g02170 626 Pfam Complement Clr-like EGF-like 498 518 IPR026823 -
Vimu7g02170 626 SUPERFAMILY PA domain 92 169 IPR046450 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02170 Vimu-Chr7 19177164 19180881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02170 22 626 Miscellaneous Gene Families AT2G14740 84.793 0.0 1102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02170 - - gmx:100820115 1254.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02170 7 19177164 19180881 Vimu7g02170 7 19177164 19180881 ECH
Vimu7g02170 7 19177164 19180881 Vimu3g03347 3 46874249 46874584 PCT