Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02163 AGTGTGGCTATGGCTGTGGCTATGACTCTGTCTTTCGGGCTCTTGTCTTCCTCCGTTCTCCCTCCAGAGGCCCACGCTCTGAGCTTCACGAGGCCTTCGCGTTCTGCTTCAGCTTCTCCACTGCGCATGGTGCGAACCGTTATCTCTTGCAAGGTCTCTCAGTCCGACCAAGGAACCCGCAAAATCCGTGGCATCATGAAACCCCGCGACGTCACCCCTGAAATGGCAGCCCTCGTCGGCGCTCAACAGATTTCCAGAACCCAAGCCCTCAAACTCATTTGGGCTTATATCAAGGCCAACAATCTTCAGGACCCTGAAGACAAGAGGACTATAATTTGTGATGAGAAGCTGAAGAAGATATTTGAAGAGAGAGATCGAGTTGGTATGCTAGAGGTTGCTCGCTTGATTAGCCCTCACTTCCTTAAAACTGAAGTTTAA 438 0.5091 SVAMAVAMTLSFGLLSSSVLPPEAHALSFTRPSRSASASPLRMVRTVISCKVSQSDQGTRKIRGIMKPRDVTPEMAALVGAQQISRTQALKLIWAYIKANNLQDPEDKRTIICDEKLKKIFEERDRVGMLEVARLISPHFLKTEV 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02163 145 CDD SWIB-MDM2_like 71 140 - -
Vimu7g02163 145 ProSiteProfiles SWIB/MDM2 domain profile. 64 142 IPR003121 -
Vimu7g02163 145 SUPERFAMILY SWIB/MDM2 domain 61 143 IPR036885 -
Vimu7g02163 145 Pfam SWIB/MDM2 domain 67 140 IPR003121 -
Vimu7g02163 145 SMART swib_2 65 145 IPR019835 -
Vimu7g02163 145 Gene3D SWIB/MDM2 domain 59 145 IPR036885 -
Vimu7g02163 145 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 54 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02163 Vimu-Chr7 19156590 19157387 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Vimu7g02163 SWIB 2.8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02163 - - var:108333445 172.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02163 7 19156590 19157387 Vimu7g02163 7 19156590 19157387 ECH