Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02159 ATGAGTTTAGACTCGTCTCGATCAGCTAATTCTAAACGAAGTTTCTCTAATTCTATATCTTCCAACCGCTCCAACGATAGCACTAAAAAGAACAGTAAAAGAAAGAAGACAATCACCAACCAGAAAACCCTAGGCGCTGCCTGGGGCTCAAATTCGAGTTCTCGCGCTTCCTCAAGAAATTCCGCCTTCTCCGGTTTCGCCAGTTATATGACAGAGAAGAATCGGAAACTACACAACCAATTTGACGCCGAGGCTTCCGCGTCGTCTTTAAGTGGCTCTACTGCAGCGAAGCCTATTTTCAGTGGAGTTTCAATTTTTGTCGATGGTTTCACAGTTCCTTCCAGCCAGGAACTGCGGAGCTACATGCTTAAGAATGGAGGAAGATTCGAGAATTATTTCTCTAGACATCGTGTAACACATATTATATGCAGTAATCTGCCTGATAGTAAAGTTAAGAACCTCAGAGCCTTCAGTGCAGGGTTGCCAGTAGTAAAACCCACTTGGATTTTAGATTCTGTTGCTGCTAATAGACTTCTGAGCTGGGTACCTTACCAGCTGGACCAACTAGCTAATAAACAATCAAAGCTGTCAGCCTTCTTCACAATGAAAAGTAGTAAAATCTCGGAGGATGCTTTAACAAATTCCCTATGTCAAGTACAAGTAGTATCAGATGTTGAAGATTCATCTATGAGGGTTGGTCAAATAGATTCTGAGGATAGAAACTTATTCAAAGTTGGGGAAATGAGTGAACATATTGGACAAATCAGTACCACATCTGGTGATATCGAGAATAGTAATGCAATTATGACTGAGGAGCCAACTAGTGTCAGAGTTAAGTTTGATGAAGAGCAAGCAGCTAGAAGCAATGCTGCTGCGAAAGATGAGAGCAATGTCAAAAGTGAACTTGGACCCACTCATCAAGCACCTTCTACATCATTTAGTTCTCACTGCTCAGATGAGCAGAATGCACGAGAATTTCCAAGTTCTTCTGGCACTAAGCCTTTTAAACAGTGTCATTCAACTTTTGCAGACCCCAATTTCGGAGTTAAGTTTGATGAAGAGCAAGCAGCTAGAAGCAATGCTGCTGTGAAAGATGAGAGCAATGTCAAAAGTGAACTTGGACCCACTCATCAAGCACCTTCTACATCATTTAGTTCTCACTGCTCAGATGAGCAGAATGCACGAGAATTTCCAAGTTCTTCAGGCACTAAGCCTTTTAAACAGTGTCATTCAACTTTTGCAGACCCCAATTTCGTGGAAAATTATTTTAAGAGCTCACGACTACACTTTATAGGAACCTGGCGAAATCGGTATCGAAAGCGTTTTTCTACATCGTCTTCTGGGTTTAAGAATGAAAATTCTAATATTAGTGCCTCTAGTACTTCTTCTAACTCAGTTATTATCCATGTTGACATGGACTGTTTTTTTGTTTCAGTTGTTATCCGGAACCACCCTGAATTGTTGGATCAGCCTGTAGCTGTGTCTCATTCAAATAATTCAAATGGAACTGCTGAGATTTCTTCTGCTAACTACCCAGCTCGTAGTCATGGTATTAGAGCTGGTATGTTTGTTCGAGATGCCAAGGCTCTTTGTCCCCAACTTGTTATCTTTCCTTACAACTTTGAAGCTTATGAGGAAGTAAGAATCAGTAGGGTGTCTGTAACTGGAAGCAGAGTAGCTGATCAATTTTATAGTATATTGCATCAGCATTGCAACAAAGTGCAGGCTGTAAGCTGTGATGAAGCATTTTTAGATGTCACAGATTTAGAGGTTGAAGATCCCAAACTCTTAGCTTCATCTATTAGAGAAGAGATCTATAAGACCACCGGATGCACAGCTAGTGCTGGTATAGCTGGAAATATGCTTATGGCTCGTATTGCTACTAGAACTGCAAAACCAAATGGTCAATATTACATAACTAAAGAAAAGGTTGAAGATCATTTATGCCAACTCCCAATTAATTCACTTCCAGGAATAGGACATGTTTTGCAGGAGAAATTGAAGAAACAGAATATTTACACTTGTGGACAATTGCGCATTATTTCCAAGGCCTCACTGCAGAGGGATTATGGTATAAAAACAGGAGAAATGCTGTGGAATTATAGCAGAGGAATTGATAACCGGTTAGTTGGGAACTTTCAGGAAAGCAAGACTGTTGGTGCTGATGTAAATTGGGGAGTGAGATTCAAAGATATAAAAGATTGTGAACACTTTCTAATAAGTCTTTGCAAGGAGGTCTCATTACGATTGCAGTGTTGTGGAGTGCAGGGGCGCACATTCACTCTGAAGATCAAAAAGAGAAGGAAAGGTGCTGGTGAACCCGCAAAGTTTATGGGCTGTGGGGACTGTGAAAATCTGAGTCACTCTATAACGGTTCCTCTTGCTACTGATAACATGGAAATACTCCAAAGAATTGTAAAGCAGCTGTTTGGATGTTTTAACATAGATGTCAAGGAGATTCGAGGTATTGGCTTGCAAGTTTCCAGACTTGAAAGTGCAGAAGCTTCTAAACGAGGTACAACAAAATATACTTTGAAATCATGGCTTACTTCTGCATCTGCTGGTGTTGAAAATCAGACATATCCTATAGGTAATGACAAACACAGCATGGATAACACTTCCAGTCTTGCATGTGTAAATTTGCTAGAGTCTTCAGTGGAAATGGACAATAAAATACCAGCTAATGAGGCTAGTACTGACCCAATTTCAACACCTCCCCCCTTATGTGACCTTGACATTGAAGTTATAAGGAATCTTCCCCCGGATGTATTTTCAGAATTAAATGAAATTTACAGAGGGAAGTTAGTTGATTATATTGCTAACTGGAAAAACACAAGTGAGAGCTCCAGCCTTTCAGGAAACTCATTTTTTGAGCAAAAAGCAATAAACAACGAAGAGGAACTTTCCTATTCTGAACCGATTCCTCAAGGCAATTTATTATCAAAAAACAAGGCAAAGCAACATGTGTCGAGCACTAGTGAAGGCGAAACTATATCATATTCAGTCCGTGGACCCAATTTCAAGTTTACACACCATTCTAGTTTTGAAAACAATGATTTGTTTCCTTCTTCTTTGAGTCAAGTTGATGGTTCAGTGTTTCAACAATTGCCTGAGGATTTTAAAGCCGACATTGTTGAGCAGCTTCCTGCACACAGGAGGCCAGATATTTGCTCCAATGTTGTGATTCCACCTCTTGAAAACCATTCGTTGTCAGTACGCGTTGAAATTTCTGATGATTCTCCTATATGTAGTTATAATAATGACAGTCTATGGGTTGGAAATCCTCCAAATTGGGTTGAGAAGTTCAAAGGTAGCAGTTACTTAATTTTAAAGAAACTTGCAGAAATGTATTTAAGATCAGGGTTGGCAAACACATTGTCTTCAGTTTTGCACCAAATTATATCTGAATTCTACGAGCTAAATCTGGCCCAGCAGTTTTCTGATGAAACTGTTGACATTATGTGTGAGCTACTGAGGCAGTATATCAAAGTGAAGATTGAAAGAGATATTGAAGAGATTTATATATGTTTCCGACTTCTGAAAAGGAGGGGTAGAGTTCACTGTTTGCGGCCAAGTCCCAATTTTTCCTACAAGTATATGATACTGTATATCCTTACCTTCAGGTATTCCTTCAGCCTACTATCTCTTTTACCATCATCTGTTGTTTATCAATCAAACAACATTTTCTCTCCTTTCCTCCACTTCCCAACTCTTACAATAGCAGAATTGAGGTTTTTCTTGTGGCTGGACAACACTTTCATAACTGTTGAATCAGAAATTATTGTTGCAGTGGCAGCTGGGAAGGGTAGATTTAGTCATTTTGGAGAACCGTCTAATAAAATCAATACAGAAGCTGCTTGTATAATTTGCTACTAG 3876 0.396 MSLDSSRSANSKRSFSNSISSNRSNDSTKKNSKRKKTITNQKTLGAAWGSNSSSRASSRNSAFSGFASYMTEKNRKLHNQFDAEASASSLSGSTAAKPIFSGVSIFVDGFTVPSSQELRSYMLKNGGRFENYFSRHRVTHIICSNLPDSKVKNLRAFSAGLPVVKPTWILDSVAANRLLSWVPYQLDQLANKQSKLSAFFTMKSSKISEDALTNSLCQVQVVSDVEDSSMRVGQIDSEDRNLFKVGEMSEHIGQISTTSGDIENSNAIMTEEPTSVRVKFDEEQAARSNAAAKDESNVKSELGPTHQAPSTSFSSHCSDEQNAREFPSSSGTKPFKQCHSTFADPNFGVKFDEEQAARSNAAVKDESNVKSELGPTHQAPSTSFSSHCSDEQNAREFPSSSGTKPFKQCHSTFADPNFVENYFKSSRLHFIGTWRNRYRKRFSTSSSGFKNENSNISASSTSSNSVIIHVDMDCFFVSVVIRNHPELLDQPVAVSHSNNSNGTAEISSANYPARSHGIRAGMFVRDAKALCPQLVIFPYNFEAYEEVRISRVSVTGSRVADQFYSILHQHCNKVQAVSCDEAFLDVTDLEVEDPKLLASSIREEIYKTTGCTASAGIAGNMLMARIATRTAKPNGQYYITKEKVEDHLCQLPINSLPGIGHVLQEKLKKQNIYTCGQLRIISKASLQRDYGIKTGEMLWNYSRGIDNRLVGNFQESKTVGADVNWGVRFKDIKDCEHFLISLCKEVSLRLQCCGVQGRTFTLKIKKRRKGAGEPAKFMGCGDCENLSHSITVPLATDNMEILQRIVKQLFGCFNIDVKEIRGIGLQVSRLESAEASKRGTTKYTLKSWLTSASAGVENQTYPIGNDKHSMDNTSSLACVNLLESSVEMDNKIPANEASTDPISTPPPLCDLDIEVIRNLPPDVFSELNEIYRGKLVDYIANWKNTSESSSLSGNSFFEQKAINNEEELSYSEPIPQGNLLSKNKAKQHVSSTSEGETISYSVRGPNFKFTHHSSFENNDLFPSSLSQVDGSVFQQLPEDFKADIVEQLPAHRRPDICSNVVIPPLENHSLSVRVEISDDSPICSYNNDSLWVGNPPNWVEKFKGSSYLILKKLAEMYLRSGLANTLSSVLHQIISEFYELNLAQQFSDETVDIMCELLRQYIKVKIERDIEEIYICFRLLKRRGRVHCLRPSPNFSYKYMILYILTFRYSFSLLSLLPSSVVYQSNNIFSPFLHFPTLTIAELRFFLWLDNTFITVESEIIVAVAAGKGRFSHFGEPSNKINTEAACIICY 1291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02159 1291 Gene3D - 715 838 IPR036775 GO:0003684|GO:0006281
Vimu7g02159 1291 ProSiteProfiles BRCT domain profile. 95 186 IPR001357 -
Vimu7g02159 1291 CDD BRCT_Rev1 99 186 - -
Vimu7g02159 1291 PANTHER DNA REPAIR PROTEIN REV1 352 1183 - -
Vimu7g02159 1291 MobiDBLite consensus disorder prediction 358 405 - -
Vimu7g02159 1291 FunFam DNA repair protein REV1 92 187 - -
Vimu7g02159 1291 Pfam impB/mucB/samB family C-terminal domain 717 837 IPR017961 GO:0003684|GO:0006281
Vimu7g02159 1291 Pfam impB/mucB/samB family 470 628 IPR001126 GO:0006281
Vimu7g02159 1291 SMART BRCT_7 97 176 IPR001357 -
Vimu7g02159 1291 Gene3D - 416 448 - -
Vimu7g02159 1291 Gene3D BRCT domain 90 186 IPR036420 -
Vimu7g02159 1291 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 715 828 IPR036775 GO:0003684|GO:0006281
Vimu7g02159 1291 Gene3D - 484 538 - -
Vimu7g02159 1291 FunFam DNA repair protein REV1 716 837 - -
Vimu7g02159 1291 SUPERFAMILY BRCT domain 54 188 IPR036420 -
Vimu7g02159 1291 MobiDBLite consensus disorder prediction 38 60 - -
Vimu7g02159 1291 CDD PolY_Rev1 418 830 - -
Vimu7g02159 1291 MobiDBLite consensus disorder prediction 361 405 - -
Vimu7g02159 1291 ProSiteProfiles UmuC domain profile. 467 660 IPR001126 GO:0006281
Vimu7g02159 1291 FunFam DNA repair protein REV1 484 538 - -
Vimu7g02159 1291 SUPERFAMILY DNA/RNA polymerases 460 710 IPR043502 -
Vimu7g02159 1291 Gene3D - 651 705 - -
Vimu7g02159 1291 MobiDBLite consensus disorder prediction 1 26 - -
Vimu7g02159 1291 MobiDBLite consensus disorder prediction 290 337 - -
Vimu7g02159 1291 Pfam BRCT domain, a BRCA1 C-terminus domain 98 184 IPR001357 -
Vimu7g02159 1291 FunFam DNA repair protein REV1 525 639 - -
Vimu7g02159 1291 MobiDBLite consensus disorder prediction 1 60 - -
Vimu7g02159 1291 Gene3D - 467 640 IPR043128 -
Vimu7g02159 1291 MobiDBLite consensus disorder prediction 285 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02159 Vimu-Chr7 19120952 19133604 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02159 K03515 - gmx:100778409 1330.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02159 7 19120952 19133604 Vimu7g02159 7 19120952 19133604 ECH