Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02157 ATGATGAGATTGACGATGGCGGCACAAGCAGAATGGATGTTCAGAGCGTTGAGGAGTGGTCGGCGGCACTTGTCGGCGGGAAGGCAGCTGGAGGAGAAATGGCTTACGCTGCCTCCCGTGGCGGCGAGTGCCACCGTGGAGGTGAATGGAAAGAGAAAGGGAAAGGGAAACCAACTCTCCTCCACTTCCACCACCGCGCTCAAATGGATTGTTCGCTGTTGCCCAAACCTCCCCATATCCCTTCTGCACAAGCTTTTCCGTCTGAGACAAGTTCGACTTCTCTCTCCTCCTCACATGGACATGCAACAGCAAACACTCAAAAGGGTGGCAGCTAAGTACACCTTGAACGCTGGAGATCGGATTTTACTGCCTCAATCTGTTCAACAAAAACCAACGCCTACGCACAAACCTCATTCTCCTCTCACTCCCCAACAAATCAACTTCATCCGCACTCTTGTCATATACAAGGATCCTGCCATTCTCGTCCTCAACAAACCTCCAGGAATGCCTGTGCAGGGTGGCATTAATATCAAACACAGTTTAGATGCGGTAGCTGCTGCATGTTTAAATTATGAATACTCTGAACCCCCTCGTCTGGTGCATAGACTAGACAGAGACTGTTCTGGCCTACTGGTGATGGGAAGAACACAGACAAGTACTACAGTTCTGCATTCCATCTTTCGGGAGAAAACATCTAGGGCATTAGATGATATTGGCGAAGAGAAGAGAATACTACAAAGAAGGTATTGGGCACTTGTCCTTGGATGTCCTAGACGTTCAAAGGGGTTGGTCACTGCTTCACTGGGTAAGGTGGTAGTTGACAATGGGAAATCTGATCGAATAACTGTAGTTGACAATTCTGCATCATTGTCATCACAGCATGCAATTACAGAGTACCGAGTGATTGCATCATCATCACAAGGTTGCATGAATTTTCCTGTCAAGTGCTTCGCCTCAGCTCTTCTTATCTGGCACCCCCTACTTAATGCCATCTCAAATAGTGCAGGTTACACATGGTTGGAGTTGTCCCCTTTAACCGGTAGAAAACACCAGCTTCGAGTGCACTGTGCCGAGGTGTTAGGTACACCGATAGTTGGGGACTACAAGTATGGATGGCAAGCTCACAGGAAGTGGGGAGGTTTTGATTTGTCTAATGTGGAGGACTCATGTGAAGAGCTTCTCAAGGAAGAAACACTCCCCTTTGGCCTTAATTTGAACAATGGGAGCATCTCTGAGAACCATCCTCGTTTACATCTTCATTGCAAGGAGATAGTCTTACCCAATATATCTCAAGCACTGCAAAATGTGCAATCATTTTCCAGTTGTGATCTTTCACAAGTGGAACGGCTTGAATTGGTCGCGGATTTGCCTCCATACATGCAAAGAAGTTGGGATGTCACAAATTGTTGA 1410 0.4716 MMRLTMAAQAEWMFRALRSGRRHLSAGRQLEEKWLTLPPVAASATVEVNGKRKGKGNQLSSTSTTALKWIVRCCPNLPISLLHKLFRLRQVRLLSPPHMDMQQQTLKRVAAKYTLNAGDRILLPQSVQQKPTPTHKPHSPLTPQQINFIRTLVIYKDPAILVLNKPPGMPVQGGINIKHSLDAVAAACLNYEYSEPPRLVHRLDRDCSGLLVMGRTQTSTTVLHSIFREKTSRALDDIGEEKRILQRRYWALVLGCPRRSKGLVTASLGKVVVDNGKSDRITVVDNSASLSSQHAITEYRVIASSSQGCMNFPVKCFASALLIWHPLLNAISNSAGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGGFDLSNVEDSCEELLKEETLPFGLNLNNGSISENHPRLHLHCKEIVLPNISQALQNVQSFSSCDLSQVERLELVADLPPYMQRSWDVTNC 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02157 469 Gene3D Pseudouridine synthase 144 438 - -
Vimu7g02157 469 CDD PseudoU_synth_RluA_like 160 379 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vimu7g02157 469 Pfam RNA pseudouridylate synthase 160 357 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vimu7g02157 469 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 55 466 - -
Vimu7g02157 469 SUPERFAMILY Pseudouridine synthase 148 428 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02157 - - gmx:100779473 681.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02157 7 19108756 19112636 Vimu7g02157 7 19108756 19112636 ECH