Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01738 ATGGCCTTCGGGGCCAATGGCTTGGACCTAGTTCAATATCCAAGCAGTGATCTCACAGACGTGAATGATTTAAGGCGTGCTGTGTTTAGTTTTGTAACTCTAAAATATAGAAAATCCCACACACTTACGTTTTTCGTTGTTCACACTGATAGCCTGAATCCAACTGGGCTGTATGACATTGTGGCAATTAAAGATGGTGATCAAGGACCAGTTACATCCACCATGGACGCAGTTCTCTCCTTGGATGATGGAAGATGGTTGCATTCTTCCGTTGAATCAAGGGAAGACCCCTTACAATCGCTCAACATCAAGCAACCTTTGCCACCTCCTGTTCTTGCGCAGGTGCACCCAGAATGTGCCCATATTCCTCCTTCAAAAGTTGCAGATCCAAGACCGGGACCAGCTAAATCTTCCAATGATTCTGGACTTGGTCCAACAACATATCAACACCTACATATTCCTGTCAAAATGATGGAAGATTTTTTGAGATTAGCTTCGCAGAACACACGGAAGAACTTAGAGACATGTGGTGTTCTTGCAGGGTCCTTGAAAAACAGGGTATTTCATATCACGACACTTATAATCCCAAAGCAGGAATCAACCTCAGACTCGACTGCCTATATAGCAGGAAAAAGGATGAGAAGGGTACATGGTTGGTTGAGTTGGGCTAAATGCACGGAAAAAGTAAAGAATTTAGCTTGGCATAATTTGATTGATGAATTGGGCCTCAGGGCATGTTCAACTTTGAACGAAGAAGAAATATTTGAAGTTCAAGACAGCTTATCACTCTTTCCTTTAGGTTGGATACATACACATCCATCACAAACTTGTTTCATGTCTTCAGTGGATCTACACACTCATTACTCATACCAGATCATGTTACCAGAGGCAATTGCTATTGTCATGGCCCCTACAGATACTACTAGTCCACATGGCATATTTCATCTATCTGATCCAGGTGGTGTTTCTGTAATTCGTAACTGTCAACAACGTGGATTTCATCCCCACGAAGAGCCTACGGATGGAAGTCCAATATATGAACATTGCTCTCATGTCTATATGAACGCTAACTTGAGGTTCGATGTTGTTGACCTTCGAGAGCGATGA 1107 0.4264 MAFGANGLDLVQYPSSDLTDVNDLRRAVFSFVTLKYRKSHTLTFFVVHTDSLNPTGLYDIVAIKDGDQGPVTSTMDAVLSLDDGRWLHSSVESREDPLQSLNIKQPLPPPVLAQVHPECAHIPPSKVADPRPGPAKSSNDSGLGPTTYQHLHIPVKMMEDFLRLASQNTRKNLETCGVLAGSLKNRVFHITTLIIPKQESTSDSTAYIAGKRMRRVHGWLSWAKCTEKVKNLAWHNLIDELGLRACSTLNEEEIFEVQDSLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAIAIVMAPTDTTSPHGIFHLSDPGGVSVIRNCQQRGFHPHEEPTDGSPIYEHCSHVYMNANLRFDVVDLRER 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01738 368 SMART pad1_6 150 319 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vimu7g01738 368 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 147 295 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vimu7g01738 368 CDD MPN_AMSH_like 148 366 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Vimu7g01738 368 MobiDBLite consensus disorder prediction 121 146 - -
Vimu7g01738 368 SUPERFAMILY JAB1/MPN domain 150 322 - -
Vimu7g01738 368 ProSiteProfiles MPN domain profile. 151 322 IPR037518 -
Vimu7g01738 368 PANTHER AMSH-LIKE PROTEASE 70 366 - -
Vimu7g01738 368 Gene3D Cytidine Deaminase, domain 2 135 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01738 Vimu-Chr7 16046561 16051698 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01738 K11866 - gmx:100812784 503.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01738 7 16046561 16051698 Vimu7g01738 7 16046561 16051698 ECH