Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01717 ATGAACGCCGTCCCTTCTTCTTCCTCTTCCGCCTTCGCTTTCGTAACTCAGTCCAAGAACCCTAACTATATCTTCAAGCTCACACATAAAGTACCCATTTTGCCCCTACATTCACATGCTCCGTGTTGCTCTCTCAGTGACTCATCCTCCTCGTACACCACGGTGCTGGACAAAAGTGCCCTTTCATCGGAACAGAATTACAGAAATGCAGTTTCGCCCGAAGACTCGGGCTCCGTGGATGCCCTTGCGGTTCGCCGGCCGGTGACGGATTTTTCCGGCGAAGAGGAAGAAGAGAAGGAGGCGGAGGAGGAGGAAGAGAAGGAGAATGAAGCGAATGAAGCGGATGACGCGAAGGCATCGGCGATCGACGCGGGGCTCGCGAAATTCGCGAAGAAGATGCCCATGTTTGAACCTGAGAGGGTGGAATCGAAAGAGAGACCCCTCAAAGTGAATTTGGACTTGGCGTTATACAGGGCGAAGCTTATGGCTAGAAGAAGCTTTCGATATGAAGAAGCAGAGGCATTGCTTCGAAAGTGTATAAGCTTTTGGCCTGAAGATGGTCGACCTTACGTGGTACTTGGAAAGATTTTGAGCAAGCAATCGAAAACAGGTGAAGCCAGAGAGATATACGAGAAGGGTTGCCAGGCTACGCAGGGTGAAAATGCTTACATTTGGCAGTGCTGGGCTGTTCTTGAAATGCAAATGGGAAATTTCAGGAGAGCAAGAGAGTTGTTTGATGCTGCCACGGTTGCTGATAAGAGGCATGTTGCTGCTTGGCATGGATGGGCAGTTCTAGAGTTAAAGCAGGGAAATATAAAGAAGGCAAGGAGTCTACTCGGTAAAGGTCTTCAATATGGTGGACAAAATGAGTACATATACCAAACACTTGCACTGCTTGAAGCTAGAGCAAAAAGATATCAGCAGGCTCGTTATTTATTCAATCAGGCCACAAAGTGTAATCCTAATAGCTGTGCTAGTTGGCTTAGTTGGGCTCAAATGGAGGTGGAACAAGAAAACTACCGTGCTGCTAGGAAATTGTTTGAGGTTAAAGCAGTGCAGGCTAGTCCCAAAAATAGGTTTGCTTGGCATGTATGGGGCGTTTTTGAAGCAAACATTGGCAACATTGACAAGGGAAGAAAACTTTTAAAGATAGGTCACACTCTAAATCCGAGGGATGCTGTTCTACTTCAATCTCTTGCTTTATTAGAATACCAACACACAACTGCAAACCTTGCTCGGGTTTTGTTCAGGAGAGCGTCAGAATTGAATCCAAGGCACCAACCTGTTTGGTTTGCTTGGGGTTGGATGGAATGGAAGGAAGGAAACATGAATAAAGCCAGAGAATTCTACCAAAAAACACTCTCAATTGATCAGAACAGTGAAACTGCTGCCAGATGCCTTCAGGCTTGGGGTGTTCTGGAGCAGAGGCTTGGCAATCTTTCAACTGCACGTAGATTATTTAAATCCTCACTGAATGTAAATTCTCAGAGTTATGTGACATGGATGACTTGGGCAACAATGGAGGAAGAACAAGGAAACTCCATGCGTGCTGAAGAGATTCGTAATCTCTATTTCCAACAGCGCACAGAAGTTGTAGATGATGCTTCATGGGTTATGGGATTCTTAGATATTTTAGACCCGGCCATTGACACTTTAAAGACGATCCTCAAGCTGAGCCCAAATTCCTACAACATGCCATTTAATTCTTTGAGAAATATTTCGGGAACAGATAAAAACAGTGACGATTTTTCTATTGAAGACGATGATGAGGATGATGCAAATGGTGAAAGTGACTTCGATTTGGATGCTTTCATTATGAAAAGACTATCCTTAGATTCCTCCAATCTGGAAGTTCAGTTGGAAGCACCCAAAACTTCTTCTGAGAAGAGAATTCCATCTGGTAGAAGGATATGGCGACCAAATAACAGAATTGCTAAAGTGCAAGTCCAAAGAAATGTTGTTTAG 1965 0.4468 MNAVPSSSSSAFAFVTQSKNPNYIFKLTHKVPILPLHSHAPCCSLSDSSSSYTTVLDKSALSSEQNYRNAVSPEDSGSVDALAVRRPVTDFSGEEEEEKEAEEEEEKENEANEADDAKASAIDAGLAKFAKKMPMFEPERVESKERPLKVNLDLALYRAKLMARRSFRYEEAEALLRKCISFWPEDGRPYVVLGKILSKQSKTGEAREIYEKGCQATQGENAYIWQCWAVLEMQMGNFRRARELFDAATVADKRHVAAWHGWAVLELKQGNIKKARSLLGKGLQYGGQNEYIYQTLALLEARAKRYQQARYLFNQATKCNPNSCASWLSWAQMEVEQENYRAARKLFEVKAVQASPKNRFAWHVWGVFEANIGNIDKGRKLLKIGHTLNPRDAVLLQSLALLEYQHTTANLARVLFRRASELNPRHQPVWFAWGWMEWKEGNMNKAREFYQKTLSIDQNSETAARCLQAWGVLEQRLGNLSTARRLFKSSLNVNSQSYVTWMTWATMEEEQGNSMRAEEIRNLYFQQRTEVVDDASWVMGFLDILDPAIDTLKTILKLSPNSYNMPFNSLRNISGTDKNSDDFSIEDDDEDDANGESDFDLDAFIMKRLSLDSSNLEVQLEAPKTSSEKRIPSGRRIWRPNNRIAKVQVQRNVV 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01717 654 MobiDBLite consensus disorder prediction 582 597 - -
Vimu7g01717 654 ProSiteProfiles TPR repeat profile. 427 460 IPR019734 GO:0005515
Vimu7g01717 654 Pfam Tetratricopeptide repeat 231 279 - -
Vimu7g01717 654 Gene3D Tetratricopeptide repeat domain 399 545 IPR011990 GO:0005515
Vimu7g01717 654 Gene3D Tetratricopeptide repeat domain 92 398 IPR011990 GO:0005515
Vimu7g01717 654 MobiDBLite consensus disorder prediction 94 111 - -
Vimu7g01717 654 SUPERFAMILY TPR-like 356 564 IPR011990 GO:0005515
Vimu7g01717 654 PANTHER PROTEIN HIGH CHLOROPHYLL FLUORESCENT 107 33 643 IPR044624 GO:0003729|GO:0006397
Vimu7g01717 654 Coils Coil 91 120 - -
Vimu7g01717 654 ProSiteProfiles TPR repeat profile. 290 323 IPR019734 GO:0005515
Vimu7g01717 654 MobiDBLite consensus disorder prediction 63 117 - -
Vimu7g01717 654 FunFam PsbB mRNA maturation factor Mbb1 396 544 - -
Vimu7g01717 654 Pfam Tetratricopeptide repeat 429 459 IPR019734 GO:0005515
Vimu7g01717 654 SMART tpr_5 187 220 IPR019734 GO:0005515
Vimu7g01717 654 SMART tpr_5 256 289 IPR019734 GO:0005515
Vimu7g01717 654 SMART tpr_5 393 426 IPR019734 GO:0005515
Vimu7g01717 654 SMART tpr_5 153 186 IPR019734 GO:0005515
Vimu7g01717 654 SMART tpr_5 427 460 IPR019734 GO:0005515
Vimu7g01717 654 SMART tpr_5 464 497 IPR019734 GO:0005515
Vimu7g01717 654 SMART tpr_5 324 358 IPR019734 GO:0005515
Vimu7g01717 654 SMART tpr_5 222 255 IPR019734 GO:0005515
Vimu7g01717 654 SMART tpr_5 290 323 IPR019734 GO:0005515
Vimu7g01717 654 MobiDBLite consensus disorder prediction 578 597 - -
Vimu7g01717 654 SUPERFAMILY TPR-like 90 404 IPR011990 GO:0005515
Vimu7g01717 654 SMART hat_new_1 407 439 IPR003107 GO:0006396
Vimu7g01717 654 SMART hat_new_1 338 371 IPR003107 GO:0006396
Vimu7g01717 654 SMART hat_new_1 478 510 IPR003107 GO:0006396
Vimu7g01717 654 SMART hat_new_1 304 336 IPR003107 GO:0006396
Vimu7g01717 654 SMART hat_new_1 201 234 IPR003107 GO:0006396
Vimu7g01717 654 SMART hat_new_1 236 268 IPR003107 GO:0006396
Vimu7g01717 654 SMART hat_new_1 441 476 IPR003107 GO:0006396
Vimu7g01717 654 SMART hat_new_1 270 302 IPR003107 GO:0006396
Vimu7g01717 654 FunFam Uncharacterized protein 137 395 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01717 - - vun:114175850 1182.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01717 7 15840323 15844769 Vimu7g01717 7 15840323 15844769 ECH