Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01707 ATGGTTCAAGAGCGACCCGAAAAACCAATGGAGGCGAAAAAGACCATGGAGTTCGAGCAGTTCGACGTTGTTGTGGACGACACAGACCATCATTTTCGAGATTCAAACGGTGGGAAGGGCTTCAACGATTCAAGGAGTGCACTTTACAAAACCATCATGAAAGAGTGGAAGATTCTGCAGAACAACTTGCCGGAATCAATCTACGTGAGGGTGTACGAGCGACGCATTGACCTAATGAGGGCTGTGATCGTAGGCGCCGAGGGCACACCGTACCACGATGGTCTCTTCTTCTTCGACATCGTGTTCCCGTCGGATTACCCGAACCACCCACCCAAGCTGTATTACTACTCCTTCGGATACAGACTAAACCCTAATCTGTACAGCAACGGAACGGCGGAGAGGTGGAACCCATGCAAGTCCTCGATCCTGCAAGTGTTACTCTCGATCCAAGCGCTGGTTCTGAACGAGAAACCCTTCTTCAACGAGCCTGGTATGGAGGGTTTGTCGATTCTCATGATAAACGTGGAGAAGAAATCGTGCGTATACAATGAGTCCGCGTATTTTCGCACTTGCAAAACCTCGTATCAACTGCTTCGGAGGCCACCTCGGAACTTCGAAGGGTTCGTGAGTTCCTACTTTCGCGAGCGAGCAGATCGCATAATCAAGGCGGGCAGGGAGTACATCAGTGGGCGCGTGAGGATCGGGTATTACTCGTGCGAGTCGGCTCCGGCGGGGGTGCATGTTTCGGGGGATTTCAAGCGCTGGATGAAGAATTTTTCCCCTGACTTTGTTCAAGCGCTTCGACGGAACGGTGGTTCAGCTTCGAACCGGGCTGGTTTAACGATTATCGCGGATAACTTTTGTGTCCGGTCGGATAACGCCGATGAAGATCGCGTCGATCCCGAGGAATCCCCAAGCAAAGGCGGCGGCTTATTCAAAACGGTGATGGGTAAGATAAAAAAGTATTTTGGATTGAAGAAAACTGGAAAAAAGAATGAAGTGATATAG 1008 0.504 MVQERPEKPMEAKKTMEFEQFDVVVDDTDHHFRDSNGGKGFNDSRSALYKTIMKEWKILQNNLPESIYVRVYERRIDLMRAVIVGAEGTPYHDGLFFFDIVFPSDYPNHPPKLYYYSFGYRLNPNLYSNGTAERWNPCKSSILQVLLSIQALVLNEKPFFNEPGMEGLSILMINVEKKSCVYNESAYFRTCKTSYQLLRRPPRNFEGFVSSYFRERADRIIKAGREYISGRVRIGYYSCESAPAGVHVSGDFKRWMKNFSPDFVQALRRNGGSASNRAGLTIIADNFCVRSDNADEDRVDPEESPSKGGGLFKTVMGKIKKYFGLKKTGKKNEVI 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01707 335 SMART ubc_7 50 195 - -
Vimu7g01707 335 Pfam Ubiquitin-conjugating enzyme 52 158 IPR000608 -
Vimu7g01707 335 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 11 271 - -
Vimu7g01707 335 Gene3D Ubiquitin Conjugating Enzyme 5 261 IPR016135 -
Vimu7g01707 335 CDD UBCc 49 163 IPR000608 -
Vimu7g01707 335 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 47 195 IPR000608 -
Vimu7g01707 335 SUPERFAMILY UBC-like 40 202 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01707 Vimu-Chr7 15774740 15775786 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01707 12 271 Miscellaneous Gene Families AT2G33770 42.857 2.50e-61 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01707 K10581 - gmx:100791343 325.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01707 7 15774740 15775786 Vimu7g01707 7 15774740 15775786 ECH