Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01433 ATGGCTCTGAATTACCCTTCTTCAACCTGCTTCATACTACTTCTAGTAACCATAACCCGTTTGATATACACAGTGGGCAAAACCGAGCAACGGAAAGCTCTGATTCTTCCAGATCTTGACATTGAAAATATATTCCATAAGCTTCGTGATGACCCCGAAACCATTCAGATGGCTTCTACGGACTACGGCCATATCGTGCATGAGCTCCCGGCAGCTGTCTTTCATCCATCTTCCATAGATGACATAGCCACCTTGATAAAAACCTCCTACAACAGCTTTGTCCCCTTTCACATAGCAGCCAGGGGCCAAGGCCACTCCACCCAAGGACAGGCCATGGCTCGTGATGGGGTAGTGGTTGACATGGCCACACTGAGAAAACAAAGAAATGGGGTTTCGATCACTGTCTCTAAAGACCCTTTGATAGGTCACTATGCTGATGTTGGAGGGGAACAACTCTGGATTGATGTGCTACATGCTTCACTAGAACATGGACTTGCACCCGTTTCTTGGACTGATTACTTGTACTTGACCGTGGGAGGAACACTTTCCAACGCTGGAATCAGTGGCCAGAGTTTCCGCTATGGACCTCAAATCAGCAACGTTCATGAAATGGATGTTATCACAGGTATGCAGTTTCTCCGAAGTTTCTCCGCAATTTCTCCTACATCTTGTCTCGGAAAAGGAGAGTTCGTAACCTGCTCCACCCAGAAGAACTTGGAGTTATTCAACGCAGTTCTTGGAGGCTTGGGACAATTTGGAGTGATAGCAAGGGCGAGAATTGCTCTTGAGGCCGCACCCAAAAGGGTTAAGTGGGTCAGACTACTTTATAGTGACTTTTCTGCTTTTACCGAAGACCAGGAACGATTAATCTCAATCAATGGAAAGAAACAAAAGAATGCATTGGATTTTCTGGAAGGGATGCTGCTAATGAACCAAGGCCCCATAAATAATTGGAGATCCTCTTTCTTCCCTCTATCTGACCATCCCAGAATAGCTTCTTTAATAACTGAACACAGCATCCTCTACTGTATTGAAGTGGCTAAATATTATGACGACCAAACCGAGAAAAATCTGGACAAGGAAATTCAAGTTTTGCTCCAAGGGCTGGCCTATATCCCCGGATTTTATTATGAGAAAAATGTCTCATACGTTGAGTTCTTGAATAGAGTTCGAAGTGGAGAGTTGAAGCTTCAGTCACAAGGACTGTGGGAGGTTCCTCACCCTTGGCTTAATTTGTTTATACCAAAATCTCAGATCTTGGATTTTAATTCAGGAGTATTCAGAGATATAATTCTTAAAAGAAACATCTCCTCTGGACCAGTCCTGGTTTACCCTATGAATAGAAACAAATGGGACGATAGGATGTCAGCATCTATACCAGACGAGGATGTGTTCTACACAGTTGGATTTTTGCACTCAAGTGGATTTGATTCTTGGAAGGCATATGATGCTCAAAACAGAGAAATTTTGGAGTTCTGTAGGGATGCTGGCATTAAGGTTAAGCAATATCTTCCTAATCACAGCACACAGGAAGATTGGACAAACCATTTCGGTGCCAAATGGATGAAATTCTTAGAAAGAAAACACCAGTTTGATCCAAGAATGATTCTATCACCCGGTCAAAAAATCTTCCACAAACAATTACAACCAGCGTTTTAA 1659 0.431 MALNYPSSTCFILLLVTITRLIYTVGKTEQRKALILPDLDIENIFHKLRDDPETIQMASTDYGHIVHELPAAVFHPSSIDDIATLIKTSYNSFVPFHIAARGQGHSTQGQAMARDGVVVDMATLRKQRNGVSITVSKDPLIGHYADVGGEQLWIDVLHASLEHGLAPVSWTDYLYLTVGGTLSNAGISGQSFRYGPQISNVHEMDVITGMQFLRSFSAISPTSCLGKGEFVTCSTQKNLELFNAVLGGLGQFGVIARARIALEAAPKRVKWVRLLYSDFSAFTEDQERLISINGKKQKNALDFLEGMLLMNQGPINNWRSSFFPLSDHPRIASLITEHSILYCIEVAKYYDDQTEKNLDKEIQVLLQGLAYIPGFYYEKNVSYVEFLNRVRSGELKLQSQGLWEVPHPWLNLFIPKSQILDFNSGVFRDIILKRNISSGPVLVYPMNRNKWDDRMSASIPDEDVFYTVGFLHSSGFDSWKAYDAQNREILEFCRDAGIKVKQYLPNHSTQEDWTNHFGAKWMKFLERKHQFDPRMILSPGQKIFHKQLQPAF 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01433 552 PANTHER GULONOLACTONE OXIDASE 40 545 - -
Vimu7g01433 552 Gene3D - 121 267 IPR016169 -
Vimu7g01433 552 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 266 544 IPR015345 GO:0009690|GO:0019139|GO:0050660
Vimu7g01433 552 SUPERFAMILY FAD-linked oxidases, C-terminal domain 266 544 IPR016164 GO:0003824|GO:0050660
Vimu7g01433 552 ProSitePatterns Oxygen oxidoreductases covalent FAD-binding site. 70 105 IPR006093 GO:0016491
Vimu7g01433 552 ProSiteProfiles PCMH-type FAD-binding domain profile. 66 265 IPR016166 GO:0071949
Vimu7g01433 552 Gene3D - 51 544 IPR016167 -
Vimu7g01433 552 FunFam Cytokinin dehydrogenase 2 268 503 - -
Vimu7g01433 552 SUPERFAMILY FAD-binding/transporter-associated domain-like 48 262 IPR036318 GO:0050660
Vimu7g01433 552 Gene3D - 268 503 IPR016170 -
Vimu7g01433 552 Pfam FAD binding domain 70 209 IPR006094 GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01433 Vimu-Chr7 13635398 13638581 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01433 K00279 - gmx:100787676 997.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01433 7 13635398 13638581 Vimu7g01433 7 13635398 13638581 ECH
Vimu7g01433 7 13635398 13638581 Vimu10g00404 10 3041702 3045233 PCT