Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00907 AAAAGGTTTCGGGATTCCGAACATTTCTTTCTCCGTCGTGGTTGCAGTCACTCACTCCGAGACCAAAACGGCGCCATGCCTACCGTCAGCGTGGGGCGGGATCGCCTGTTTGCGGCTCTAGGAAGAACTTACACGCAAGAGGAATTCGAAGACCTGTGCTTCCGTTTCGGGATCGAGCTCGATGATGTCACGACGGAGAAGGCAATTGTAAGGAAAGAAAAACATTTGGATGAAGAAGAAGCTGATGAGGACGAAGAAGTTATCTACAAGATCGAAGTTCCCGCCAATAGATATGACCTCCTGTGCCTTGAAGGGCTTGCTCAAGCCCTCCGTGTTTTCTGTGAGATTCAGGAGATCCCCAATTACAAACTATCTGGCATTAGTAAGAATGAAATGCTGAAGATGCATGTGAAGCCGGAGACTTCTGTGATTCGTCCATTTGTTGTATGTGCTGTATTAAGAGGTGTAACTTTTGATAAAGCGAGATACAACAGCTTTATCGATCTCCAGGACAAGCTTCACCAAAACATATGTCGGCGAAGAACACTTGTTGCCATCGGAACCCATGATCTGGATAAATTGGAGGGTCCTTTCACCTATGAGGCTTTGCCACCTTCAAGTATAACTTTTACGCCACTAAAGCAGGAAAGGAACTTCAGGGCTGATGAGTTGATGGAGTTCTACAAATCAGATTTGAAACTAAAGAAATTCTTGCATATAATTGAGGATTCCCCTGTCTTCCCTGTATTATATGACAGTAAGAGAACTGTGTTATCTTTACCCCCAATTATTAATGGTGCTCACTCAGCCATCACTCTGGAGACAAAGAATGTGTTTATTGAATGTACTGCTACTGATCTGACAAAGGCAAAGATTGTTTTAAATACAATGGTAACAGCCTTCTCAGAATATTGTGCGGACAAGTTTGTCATTGAACCAGTTGAAGTGATTTCTTCTGATGGCAAGTCAAACATATACCCTGATTTATCTGTCTACAATATGGAAGTTTCTCTATCTTACATTACTGGATTGATTGGGGTATCTTTGGAGGCAGAAGAGGTGACTAAGTTCTTAAATCGGATGCAATTGCATGCCAAGCAGTCTACGTCTGCTAAAAAGCAGTGTAACTTTATAGTGTCTGTACCTCCTACAAGAAGTGATGTTCTTCACCCTTGTGATGTTATGGAGGATGTCGCAATTGCTTATGGATTCAATAGTATTAAGGATAAAGCTGTAGCAGATAATAAGGGCTCAAAGAGGCTGGCTGGTTCCCTGACTCTACTTCCACTGAACGAAATAAGTGACCTTATCCGAAAAGAGGTTGCATTGATTGGGTTTACCGAGGTCTTGACATTTATACTCTGCTCTAAAAAGGAAAACTTTGCCATGCTTAACCGCAAAGACGATAAATCTAGAGCAGTTATCATTGGAAACCCCAGATCTTCGGACTTTGAGGCTGTGCGAACTAGTCTTATGCCTGGCATTTTGAAAACTGTTGCTCACAACAAGGATCATCCTAAGCCTATAAAGATTTTTGAAGTGGGTGATGTAGCACTGCTGGATGATACTAGAGATGTTGGTGCAAAAAATCTTCGCCAACTTGCTGCTCTGTACTGTGGTGCTAATGCCGGATTTGAGATAATTCACGGCTTGGTCGACAGAGTAATGGAAAAGAACGGTGTTGCCTTTGTTTCACCTGGTGATAAGTCGGGCTATTACATTGAGCGGTCAGATGAACCCGAGTTTCTTGCCGGTAGACAAGCTAGAATCATTTACAAGGGAAATCATGCTGGTACTTTTGGCATTGTTCATCCCGAGGTACTCAACAACTTCGACATTCCTGATCCATGCTCCTTTGTTGAACTTAACATAGAAAGCTTCTTGTGA 1887 0.4271 KRFRDSEHFFLRRGCSHSLRDQNGAMPTVSVGRDRLFAALGRTYTQEEFEDLCFRFGIELDDVTTEKAIVRKEKHLDEEEADEDEEVIYKIEVPANRYDLLCLEGLAQALRVFCEIQEIPNYKLSGISKNEMLKMHVKPETSVIRPFVVCAVLRGVTFDKARYNSFIDLQDKLHQNICRRRTLVAIGTHDLDKLEGPFTYEALPPSSITFTPLKQERNFRADELMEFYKSDLKLKKFLHIIEDSPVFPVLYDSKRTVLSLPPIINGAHSAITLETKNVFIECTATDLTKAKIVLNTMVTAFSEYCADKFVIEPVEVISSDGKSNIYPDLSVYNMEVSLSYITGLIGVSLEAEEVTKFLNRMQLHAKQSTSAKKQCNFIVSVPPTRSDVLHPCDVMEDVAIAYGFNSIKDKAVADNKGSKRLAGSLTLLPLNEISDLIRKEVALIGFTEVLTFILCSKKENFAMLNRKDDKSRAVIIGNPRSSDFEAVRTSLMPGILKTVAHNKDHPKPIKIFEVGDVALLDDTRDVGAKNLRQLAALYCGANAGFEIIHGLVDRVMEKNGVAFVSPGDKSGYYIERSDEPEFLAGRQARIIYKGNHAGTFGIVHPEVLNNFDIPDPCSFVELNIESFL 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00907 628 Gene3D - 332 407 - -
Vimu7g00907 628 SUPERFAMILY Class II aaRS and biotin synthetases 401 627 IPR045864 -
Vimu7g00907 628 Gene3D - 26 114 - -
Vimu7g00907 628 FunFam Phenylalanine--tRNA ligase beta subunit 26 115 - -
Vimu7g00907 628 FunFam phenylalanine--tRNA ligase beta subunit 126 330 - -
Vimu7g00907 628 Pfam Phenylalanyl tRNA synthetase beta chain CLM domain 429 624 IPR041616 -
Vimu7g00907 628 SUPERFAMILY Putative DNA-binding domain 333 408 IPR009061 -
Vimu7g00907 628 Pfam Phe-tRNA synthetase beta subunit B1 domain 26 114 IPR040659 -
Vimu7g00907 628 SMART B5_2 331 404 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Vimu7g00907 628 SUPERFAMILY Putative DNA-binding domain 30 120 IPR009061 -
Vimu7g00907 628 CDD PheRS_beta_core 429 627 IPR041616 -
Vimu7g00907 628 Pfam B3/4 domain 145 305 IPR005146 GO:0003723|GO:0004826
Vimu7g00907 628 ProSiteProfiles B5 domain profile. 329 409 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Vimu7g00907 628 FunFam Phenylalanyl-tRNA synthetase, beta subunit 332 407 - -
Vimu7g00907 628 NCBIfam phenylalanine--tRNA ligase subunit beta 26 628 IPR004531 GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432
Vimu7g00907 628 SMART B3_4_2 144 306 IPR005146 GO:0003723|GO:0004826
Vimu7g00907 628 Pfam tRNA synthetase B5 domain 334 404 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Vimu7g00907 628 PANTHER PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 26 628 IPR045060 GO:0004826|GO:0006432
Vimu7g00907 628 FunFam phenylalanine--tRNA ligase beta subunit 428 628 - -
Vimu7g00907 628 SUPERFAMILY PheT/TilS domain 136 286 - -
Vimu7g00907 628 Gene3D Bira Bifunctional Protein; Domain 2 428 628 IPR045864 -
Vimu7g00907 628 Gene3D - 126 330 IPR020825 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00907 K01890 - gmx:100805249 1154.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00907 7 8829595 8837717 Vimu7g00907 7 8829595 8837717 ECH