Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00901 ATGTATGTTATGGTATGGTATGGAGTGCATGATGAGATGTGGATGAAGTGGTATCTAGGTGGTACCTACTGGGGAAGCGGCAAAGTGATGGAAATGTCACGGGCTCGTATTGCCGTCCAACGCTTCCGCTGTACCTACGCTGCGTTATCGTCGATCACCTCATCTTCATCTGCAGTTACACGCTTTCAGTTCCAATGTTCACAACAACATCTCACGCGCGCATCCCTCCCCTTCCACTTCCACTCTCGTTATTCTTCGTCTGTCCCCAGTCAAACCTTGAACGGTGGCGTCGAGAATTATCCGAGTGGAGACTTTGATTTCAAGCCCCTCACTGGCTGGAAAAAATTCATCGTCAAGCTCAAGATGCTAACGGCCTTACCCTGGCACCGGCTCCGATACGGTACCGTTTTGACAATCAAGTTGCGCGGCCAGGTATCGGATCAGCTGAAGAGTAGGTTCTCTCGGGGATTATCTCTGCCTCAAATCTGTGATAATTTCTTGAAGGCAGCTTATGATCCTCGAGTTTCCGGTATCTATCTCCACATTGATATTTTAAATTGCGGCTGGGCAAAGGTTGAAGAAATTCGAAGGCACATATTCGATTTCAGAAAGTCAGGAAAATTTATTGTGGCTTATGTCCCTTCCTGTCGAGAAAAAGAATATTATATTGCAAGTGCGTGTGAAGAAATATATGCCCCTCCAAGCTCCATTCTTCAGAGGTACGCTGATTCTGCTTTTCCTCGGGTTAATCTTGGAATTGAACCAGAAGTAGAAAGGATTGGCAAGTACAAAAGTGTAGGAGATCAACTTACCCGTAGAACCATGTCTGAAGATCATCATGAGATGCTTACATCATTGCTTGATAATATCTATACACATTGGCTGGACAAAGTCTCTGCTGCTAGAGGAAAGAAAAGAGAAGATATTGAGAACTTCATAAATAAAGGTGTTTATCAAGTAGAGATACTTAAAGAGGAGGGCTTCATATCAGACATAATCTATGAGGATGAGGTTATTACTAGGTTGAAGGAGAGACTTCAAGTAAAAACAAATAAAAATCTGCCTATGGTTGATTACAGAAAATACTCCGGAGTTAGGAAATCAACTGTTGGACTATCAAATGGTAAAGATTTAATAGCCATCATCCGAGCTTCAGGGAGTATTCGTCGTATTGAGAGTCCACTAGGTGCCCGTAGCTCAGGTATCATTGGAGAGAAGTTAATTGAGAAGATACGCAGTATAAGAGAGTCAAATAAATACAAGGCTGCTATTATCCGAATTGACAGTCCAGGAGGGGATGCCCTTGCTTCTGATTTGATGTGGAGAGAAATCAGGCTGCTGGCTGCCTCAAAACCAGTCATTGCTTCAATGTCTGATGTGGCAGCAAGTGGAGGGTACTACATGGCAATGGGAGCAGGAGTTATTGTGGCAGAAAGTCTTACCTTAACTGGTTCAATTGGAGTGGTCACAGGAAAGCTTAACCTTGGGAAACTTTATGAGAAGATTGGCTTCCACAAAGAAATCATATCAAGGGGTAGATATGCTGAGCTGCGGGCAGCTGAACAGCGTTCACTTAGGGTTGGTACTCATGATCATTCTCTCTTTTTCTCTGCTATATACAGACCAGATGAAGCAGAGCTATTTTCCAAGTCTGTTCAGCATGCTTATAAACAATTTCGAGATAAAGCAGCCTTTTCCCGATCTATGACTGTAGACAAGATGGAAGAGGTTGCACAGGGGAGGGTTTGGACTGGCAAGGATGCAGCTTATAATGGTTTGATTGATGCTATTGGTGGCCTTTCTCGAGCAGTTGCCATAGCAAAATTGAAGGCCGGTATACCTCAAGATAGACAGGTTGGTTTTGATAATGCCTTTGTTTCTAGATTGGGTATGCTTTACACTTCAATAGACAGTTTGATTTTTGTGCTTGATCTATGTCAGGTAACTGTAGTGGAGGTCACAAGACCCAGCCCTTCTCTGCCCGAGATTTTGAGTGGTCTAGGTAATTCTCTCGTTGGAGTAGACAGAACTTTAAATGAATTACTACAGGACTTGACATTTTCCAATGGAGTCCAAGCTCGGATGGACGGAATCGTGTTTGAGAAATTGGAAGGTTATCCATACGCCAACCCCATTTTGGCATTGATAAAAGATTATCTTAGTTCCCTTTAG 2172 0.4323 MYVMVWYGVHDEMWMKWYLGGTYWGSGKVMEMSRARIAVQRFRCTYAALSSITSSSSAVTRFQFQCSQQHLTRASLPFHFHSRYSSSVPSQTLNGGVENYPSGDFDFKPLTGWKKFIVKLKMLTALPWHRLRYGTVLTIKLRGQVSDQLKSRFSRGLSLPQICDNFLKAAYDPRVSGIYLHIDILNCGWAKVEEIRRHIFDFRKSGKFIVAYVPSCREKEYYIASACEEIYAPPSSILQRYADSAFPRVNLGIEPEVERIGKYKSVGDQLTRRTMSEDHHEMLTSLLDNIYTHWLDKVSAARGKKREDIENFINKGVYQVEILKEEGFISDIIYEDEVITRLKERLQVKTNKNLPMVDYRKYSGVRKSTVGLSNGKDLIAIIRASGSIRRIESPLGARSSGIIGEKLIEKIRSIRESNKYKAAIIRIDSPGGDALASDLMWREIRLLAASKPVIASMSDVAASGGYYMAMGAGVIVAESLTLTGSIGVVTGKLNLGKLYEKIGFHKEIISRGRYAELRAAEQRSLRVGTHDHSLFFSAIYRPDEAELFSKSVQHAYKQFRDKAAFSRSMTVDKMEEVAQGRVWTGKDAAYNGLIDAIGGLSRAVAIAKLKAGIPQDRQVGFDNAFVSRLGMLYTSIDSLIFVLDLCQVTVVEVTRPSPSLPEILSGLGNSLVGVDRTLNELLQDLTFSNGVQARMDGIVFEKLEGYPYANPILALIKDYLSSL 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00901 723 Gene3D - 544 645 - -
Vimu7g00901 723 SUPERFAMILY ClpP/crotonase 379 599 IPR029045 -
Vimu7g00901 723 Gene3D - 250 303 - -
Vimu7g00901 723 Gene3D - 135 249 - -
Vimu7g00901 723 SUPERFAMILY ClpP/crotonase 121 335 IPR029045 -
Vimu7g00901 723 CDD S49_SppA_67K_type 137 344 IPR047217 -
Vimu7g00901 723 CDD S49_Sppa_N_C 379 608 IPR047272 -
Vimu7g00901 723 Gene3D - 373 525 - -
Vimu7g00901 723 Pfam Peptidase family S49 447 612 IPR002142 GO:0006508|GO:0008233
Vimu7g00901 723 Pfam Peptidase family S49 202 348 IPR002142 GO:0006508|GO:0008233
Vimu7g00901 723 PANTHER PROTEASE 4 98 722 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00901 Vimu-Chr7 8760439 8773076 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00901 K04773 - gmx:100809623 1032.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00901 7 8760439 8773076 Vimu7g00901 7 8760439 8773076 ECH
Vimu7g00901 7 8760439 8773076 Vimu10g00786 10 6929275 6932065 PCT