Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00866 ATGGCAATGCCGGAAACCATCCCTCTGACTACTCCCAGTGCTCAAGTTGTTGGAAATGCCTTTGTGGAGCAATATTATCACATTTTGCACCAATCTCCGAACTTGGTGCACAGGTTTTATCAGGATTCAAGTTTCTTAACCAGATCAGACAACAATGGTGTGATGACAACTGTGACAACTGTACAAGAAATCCATGAGAAGATTATTTCCCTGAATTATGAAGATTATACAGCAGAAATAAAAACTGCAGATGCTCAGGAGTCACATAAGGGAGGTGTGATAGTTTTAGTAACTGGGTGCTTAACTGGGAAGGATAATGTGAGAAGGAAGTTCTCACAGACATTCTTTCTGGCTCCACAAGAAAAAGGATATTTTGTCTTAAATGATGTCTTTAGGTACATTGAGGTGAATGATGCACCACAGTTAAATTCTGCCTCAGTAAATGTCATCAGTGAAAATGCTGAGACAGTGCATGAGCCAGAATCAGTTCTAGAGGAAACACATGCTCCCAAAGTTCTTGTTGAAGACACTGCAACTTCATCTGTGGCAGAGGATGAAAACCATAATAATGGCGGTGAAGTCTATCATCCTCAGGATGAAGAAGAAGGATCAGTTATTGATGAAGAGGTCGCTGAACCCCCTACTGACTTAAGTCAGAATGAAATTGTTACGGTTCATGATTCAACTTCTGCAGCTCAGGATGATGCACCGAGGAGATCGTATGCATCCATTGTAATGAAAAGTAATGTAGCATCTGGTCATGTCTACGTACCCAGCCGAGCTGCTAGAGTGGCATCTGCTAAATCCAGTGAACAATGGTCTACTACTGCCAAATCAACCCCTGTGCCTGAGTCATTTGCTCCTATTGGTGATAGTGCACCTGAGAGTAGTGACCTTCATGAAGAAGTTGAGCAACTTGAAGAAGTCTTTAAGAAATTTGGTCCTATTAAGCATGGTGGTATCCAAGTTAGAAGTAGCAAGCACGGATTCTGTTTTGGCTTTGTTGAATTTGAGGAATTGAGTTCCATGCAAAGTGCACTTGAGGCTTCACCTATCTCTGTTGGTGAGCGACAAGCTGTTGTTGAGGAAAAAAGAACTACTACACGAGTAAGCGGTAGTGGGAGAGGGAGGTATCCTCCAGGAAGAGGTGGTTTCCGAAGCGACAGTTTCAGAGCACGTGGGAAATTTGGTGGTGGACGAGGTTATGGCAGAAATGAATTCAGAAACCAAGGAGAATTCTCAGGGCAACCTAGGAGTTCTCAACGGCCAAATCAAAATGGAGGTGGGCGTGGTGGTGGACGTCAAGGTGTGGGGAACCGTAATTCTACACCATCATCTTCAGCAGCGTGA 1350 0.4363 MAMPETIPLTTPSAQVVGNAFVEQYYHILHQSPNLVHRFYQDSSFLTRSDNNGVMTTVTTVQEIHEKIISLNYEDYTAEIKTADAQESHKGGVIVLVTGCLTGKDNVRRKFSQTFFLAPQEKGYFVLNDVFRYIEVNDAPQLNSASVNVISENAETVHEPESVLEETHAPKVLVEDTATSSVAEDENHNNGGEVYHPQDEEEGSVIDEEVAEPPTDLSQNEIVTVHDSTSAAQDDAPRRSYASIVMKSNVASGHVYVPSRAARVASAKSSEQWSTTAKSTPVPESFAPIGDSAPESSDLHEEVEQLEEVFKKFGPIKHGGIQVRSSKHGFCFGFVEFEELSSMQSALEASPISVGERQAVVEEKRTTTRVSGSGRGRYPPGRGGFRSDSFRARGKFGGGRGYGRNEFRNQGEFSGQPRSSQRPNQNGGGRGGGRQGVGNRNSTPSSSAA 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00866 449 Gene3D - 6 137 - -
Vimu7g00866 449 SUPERFAMILY NTF2-like 13 134 IPR032710 -
Vimu7g00866 449 MobiDBLite consensus disorder prediction 179 201 - -
Vimu7g00866 449 MobiDBLite consensus disorder prediction 272 297 - -
Vimu7g00866 449 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 304 349 IPR000504 GO:0003723
Vimu7g00866 449 ProSiteProfiles Nuclear transport factor 2 domain profile. 17 133 IPR018222 -
Vimu7g00866 449 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 13 419 IPR039539 -
Vimu7g00866 449 SUPERFAMILY RNA-binding domain, RBD 304 394 IPR035979 GO:0003676
Vimu7g00866 449 FunFam Nuclear transport factor 2 family protein 8 137 - -
Vimu7g00866 449 CDD RRM_SF 297 349 - -
Vimu7g00866 449 MobiDBLite consensus disorder prediction 409 428 - -
Vimu7g00866 449 Pfam Nuclear transport factor 2 (NTF2) domain 17 133 IPR002075 -
Vimu7g00866 449 Gene3D - 297 406 IPR012677 -
Vimu7g00866 449 MobiDBLite consensus disorder prediction 363 449 - -
Vimu7g00866 449 CDD NTF2 13 135 IPR018222 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00866 Vimu-Chr7 8479588 8484953 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00866 K24983 - gmx:100801253 699.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00866 7 8479588 8484953 Vimu7g00866 7 8479588 8484953 ECH