Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00860 ATGAGAGAAGTGAATCCAGCCAGCCAACCACAGTACTTCCCAGTCACCAGTTTCGATCTGAGTCAGTGTGACTATCTGTCTTTCTTTCTTCTCCTTTGCAATCTTGCAATGGCACAAACACAAACCCAGAGACCCTGTTCAAGCATCATCGATTCTCTGGGTGAAGAAATCGTGAGAATCATCGCACCCGTTTCGATATGCATGTTCTTGGTCGTTATATTGGTGTCAATTCTGAACACGGATTCTTCTCTCTTCGACGCATCGATGAGCATGGTCACCATGGCCTACACCGAGACAACCTCGGACTCCACCTGGGACAAATTCCTTGGTGCCCTTTTGAACTCTCTGGCTTTCGTCGTCCTCGTCACCTTCGCAACCTTCATCCTGGTTCTCCTCTTCTACTTCCGATGCACCAGGTTCTTAAAACTCTATATGGCTTTCTCCACTTTCATCGTGCTGGGGTTCCTCGGCGGTGAAGTCTCGCTGTTCTTGATCCAACAGTTTAACACCCCCGTTGATTGCATTACGTTTTTCCTCTTGCTATGTAATTTCGCCGTTGTGGGTGTTTTGACCGTGTTTATGTCAAAAATGGCAATTTTTGTGACGCAGGGGTATTTGGTTGTTATTGGAATATTGATTGCTTATTCGTTTACTATGTTGCCTGAGTGGACCACCTGGGCCTTGCTTGTTGCTATGGCGCTGTATGATGTTGCTGCAGTTTTGTTACCAATTGGGCCGTTGAGGCTTTTGGTGGAGCTTGCAATATCAAGGGATGAGGAAATTCCCGCATTGGTTTATGAGGCTAGACCAGTGAACCATGGTAATTTGAGTCCTAGGGATCTTGTGCAGAGGAGGCGGTTATGGAGAGAAAGGAGGGTTGATAATTCAAATCTTCAAACTGATTCCAACTCAGCGTTGGGTCATGGATCCAGTGTTGAATTTCCCTCCGGTTCTGACGGAAACCCCAGCAATAACTTAAACATGGTCAGGGAGAATCCCTCTAGAAATGCAAATCCAACAGCTAATAGTCCTGGTGGCTCTTATGGTTGCATAAGTTTGGTGAATGCAGAAGAGGAACCAGTGCGCGTTCATGAGACTGATTCAGAGCTTTCTGCGCCCTTGATTGATCGTGGAATGAATGTCCAGCACGGTAGGGGGGAAGATGCTGTGCCAAGTGAGAATTTGATGCTAGAAGGAATTGGATTGGGTTCTTCTGGTTCAATCAAGTTAGGGCTGGGAGATTTTATCTTCTACAGTGTTTTGGTTGGCAGGGCGGCAATGTATGATTTTATGACGGTGTATGCATGTTATCTTGCTATCATTGCGGGTCTTGGCATAACCTTGATCCTTTTGGCTTTATATCAGAAGGCTTTGCCTGCTCTTCCTGTGTCAATAGCACTGGGATGTCCTGTGTATCTTATGGCGAAGGGAAATGCAGATGTGGGAATCAAACCACCCACCCTCCCCCACCATTATCATTGTGCCACTCAAACATCAGGTGAGAGATATCAGTTGTGCTTATAG 1524 0.4626 MREVNPASQPQYFPVTSFDLSQCDYLSFFLLLCNLAMAQTQTQRPCSSIIDSLGEEIVRIIAPVSICMFLVVILVSILNTDSSLFDASMSMVTMAYTETTSDSTWDKFLGALLNSLAFVVLVTFATFILVLLFYFRCTRFLKLYMAFSTFIVLGFLGGEVSLFLIQQFNTPVDCITFFLLLCNFAVVGVLTVFMSKMAIFVTQGYLVVIGILIAYSFTMLPEWTTWALLVAMALYDVAAVLLPIGPLRLLVELAISRDEEIPALVYEARPVNHGNLSPRDLVQRRRLWRERRVDNSNLQTDSNSALGHGSSVEFPSGSDGNPSNNLNMVRENPSRNANPTANSPGGSYGCISLVNAEEEPVRVHETDSELSAPLIDRGMNVQHGRGEDAVPSENLMLEGIGLGSSGSIKLGLGDFIFYSVLVGRAAMYDFMTVYACYLAIIAGLGITLILLALYQKALPALPVSIALGCPVYLMAKGNADVGIKPPTLPHHYHCATQTSGERYQLCL 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00860 507 SMART psh_8 109 479 IPR006639 GO:0004190|GO:0016020
Vimu7g00860 507 MobiDBLite consensus disorder prediction 298 344 - -
Vimu7g00860 507 Pfam Presenilin 54 476 IPR001108 GO:0004190|GO:0016020|GO:0016485
Vimu7g00860 507 PANTHER PRESENILIN 41 474 IPR001108 GO:0004190|GO:0016020|GO:0016485
Vimu7g00860 507 Gene3D Presenilin 401 479 IPR042524 -
Vimu7g00860 507 PRINTS Presenilin family signature 219 226 IPR001108 GO:0004190|GO:0016020|GO:0016485
Vimu7g00860 507 PRINTS Presenilin family signature 236 253 IPR001108 GO:0004190|GO:0016020|GO:0016485
Vimu7g00860 507 PRINTS Presenilin family signature 61 71 IPR001108 GO:0004190|GO:0016020|GO:0016485
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00860 Vimu-Chr7 8445819 8447597 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00860 41 476 Miscellaneous Gene Families AT2G29900 52.727 9.38e-129 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00860 K04505 - gmx:100799643 646.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00860 7 8445819 8447597 Vimu7g00860 7 8445819 8447597 ECH