Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00838 ATGTCCGGTGCAAAGAAATCTCATTTGAAGAATGCTAAACCTAGTTCTGTCGAATCTTGGACTAATCCATTTGATTCTGATGATGAGGAGAAGAATACCAAAAAATATTCTTCCTCGAGAAAGACTTCTTCGGATCGCGCACTAGTTACGCTGGAAGTTAACACCAACCCCTTTAATGATGACATTGATGCCACTAAGAAATCATCATCGTATGCCTTTCAATCGGCCAACAGGAACAGGTACAAGAATGATTTTCGCGATTCAGGCGGATTAGAGAATCAATCGGTTCAAGAACTGGAGAGTTATGCTGTGTACAAGGCTGAAGAGACCACAAATTCAGTCAACAATTGTTTGAAGATTGCAGAGAATATAAGAGAGGATGCCACCAAAACACTAGTCACCCTTCATCAACAGGGTGAACAAATTACCAGGAGTCACCATGTTGCTGCTGACATTGACCACGATTTAAGTCGGCATTCTGCTCTAAATCTGACTAACTACTTTTTCCAGGGGGAAAAGCTCTTGGGAAGCCTTGGTGGCCTCTTCTCCAAAACTTGGAAACCAAAGAAGACACGAGCAATAACAGGCCCCGTTATTGTTGGAGATGACCCAGTGAGGAGCAAGGGCAGTCATCTGGAGCAGAGAGAGAAGTTAGGACTGACATCTGCCCCCAAAGGGCAGTCCAAGCTGCGGACCCCACCTCAAGAACCATCCAATGCACTTGAAAAAGTTGAGGTTGAAAAAATGAAGCAAGATGATGCACTATCAGATTTAAGTGATCTGCTGGGAGAGCTTAAAGACATGGCTGTTGACATGGGATCCGAGATTGAGAGGCATAACAAAGCATTGAATCATCTGTACGATGATGTGGATGAGTTGAATTTCCGAATGAAAGGTGCTAATCAACGTGGCCGTCGCTTACTCGGAAAATAA 933 0.4384 MSGAKKSHLKNAKPSSVESWTNPFDSDDEEKNTKKYSSSRKTSSDRALVTLEVNTNPFNDDIDATKKSSSYAFQSANRNRYKNDFRDSGGLENQSVQELESYAVYKAEETTNSVNNCLKIAENIREDATKTLVTLHQQGEQITRSHHVAADIDHDLSRHSALNLTNYFFQGEKLLGSLGGLFSKTWKPKKTRAITGPVIVGDDPVRSKGSHLEQREKLGLTSAPKGQSKLRTPPQEPSNALEKVEVEKMKQDDALSDLSDLLGELKDMAVDMGSEIERHNKALNHLYDDVDELNFRMKGANQRGRRLLGK 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00838 310 MobiDBLite consensus disorder prediction 201 239 - -
Vimu7g00838 310 PANTHER SYNAPTOSOMAL ASSOCIATED PROTEIN 22 310 - -
Vimu7g00838 310 SMART tSNARE_6 240 307 IPR000727 -
Vimu7g00838 310 FunFam SNAP25 homologous protein SNAP33 242 309 - -
Vimu7g00838 310 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 245 307 IPR000727 -
Vimu7g00838 310 FunFam SNAP25 homologous protein SNAP33 90 179 - -
Vimu7g00838 310 CDD SNARE_SNAP25N_23N_29N_SEC9N 102 162 IPR044766 GO:0005484|GO:0031201
Vimu7g00838 310 SUPERFAMILY SNARE fusion complex 248 308 - -
Vimu7g00838 310 CDD SNARE_Qc 250 306 - -
Vimu7g00838 310 MobiDBLite consensus disorder prediction 24 41 - -
Vimu7g00838 310 MobiDBLite consensus disorder prediction 1 48 - -
Vimu7g00838 310 Gene3D - 242 309 - -
Vimu7g00838 310 Gene3D - 90 165 - -
Vimu7g00838 310 SUPERFAMILY SNARE fusion complex 94 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00838 Vimu-Chr7 8267646 8269295 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00838 K18211 - gmx:100809874 518.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00838 7 8267646 8269295 Vimu7g00838 7 8267646 8269295 ECH