Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00799 ATGGCAGCGGCACCTGCAGCTACTTTCACTATTGGATCCACCGGTACCCTTGGTCAAAGAGGAAGCTCTTCTCCTCAATTAAGTTCTTTTGGGTTGAAATTCAACACCCAAAATCCTCTGAAGAGTTTCTGTGGCCTCAAGGCTATGTCATCTGTGAGATGTGAGTCAGAATTATCTTTCTTAGGTAGCAAAAGTGGTTCTGCTCTGCGGGCATCTTTTTCATCCAAGGCTCAGAAGGAAAACAACCGGAGCTTCAACTACAAGTTGCAGCCTCAGGCTTCGTACAAAGTTGCAGTTCTTGGTGCTGCTGGTGGGATTGGGCAGCCGCTCGCGCTTCTTATAAAGATGTCCCCTTTAGTTTCCGACCTGCATCTCTATGATATTGCGAATGTCAAGGGAGTGGCTGCTGATATCAGTCACTGCAACACACCCTCACAAGTCAGGGATTTCACTGGAGCTTCTGAGTTGGCAAATTGTTTGAATGGTGTGGATGTTGTTGTCATTCCTGCCGGTGTTCCGAGGAAGCCCGGCATGACTCGTGATGACCTTTTCAACATCAATGCTGGAATAGTCAGGGACTTGGTTTCGGCTGTTGCGGATAATTGCCCAGGTGCTTTTATTCAAATTATCAGTAACCCTGTGAACTCTACTGTGCCTATTGCTGCAGAAGTTTTGAAACAGAAGGGTGTCTATGATCCTAAAAAGCTCTTTGGTGTTACCACACTGGATGTTGTGAGGGCAAACACATTTGTTGCTCAGAGGAAGAACCTGAAGCTGATTGATGTTGATGTCCCTGTTGTTGGGGGCCATGCCGGGATTACCATTCTTCCTCTGTTGTCAAAGACAAGACCCTCAGCGAGTTTCACTGATGAAGAGGTTGAGGAGTTGACGGTCAGGATTCAAAACGCTGGTACTGAAGTTGTGGAAGCAAAGGCAGGTGCTGGGTCTGCTACCTTGTCAATGGCATATGCAGCTGCTAGATTTGTTGAGTCGTCTTTGCGTGCACTTGATGGAGACGGAGATGTGTATGAGTGCTCATTTGTGCAATCAGATTTGACTGACCTTCCATTCTTTGCTTCAAGGGTGAAGCTTGGTAGGAAAGGTATCGAGGCTTTAATTCCATCTGACCTCCAAGGGTTGACTGACTACGAGCAGAAGGCTTTGGAAGCACTTAAGCCAGAACTCAAGGCCAGCATAGAGAAGGGGATTGCTTTCGCTCAGAAGCAAACTGTTGCTGCTTAA 1242 0.471 MAAAPAATFTIGSTGTLGQRGSSSPQLSSFGLKFNTQNPLKSFCGLKAMSSVRCESELSFLGSKSGSALRASFSSKAQKENNRSFNYKLQPQASYKVAVLGAAGGIGQPLALLIKMSPLVSDLHLYDIANVKGVAADISHCNTPSQVRDFTGASELANCLNGVDVVVIPAGVPRKPGMTRDDLFNINAGIVRDLVSAVADNCPGAFIQIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQRKNLKLIDVDVPVVGGHAGITILPLLSKTRPSASFTDEEVEELTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECSFVQSDLTDLPFFASRVKLGRKGIEALIPSDLQGLTDYEQKALEALKPELKASIEKGIAFAQKQTVAA 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00799 413 FunFam Malate dehydrogenase 93 239 - -
Vimu7g00799 413 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 89 239 IPR036291 -
Vimu7g00799 413 Gene3D - 93 239 - -
Vimu7g00799 413 CDD MDH_glyoxysomal_mitochondrial 95 406 IPR010097 GO:0006099|GO:0030060
Vimu7g00799 413 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 240 405 IPR022383 GO:0016616
Vimu7g00799 413 SUPERFAMILY LDH C-terminal domain-like 239 406 IPR015955 GO:0003824|GO:0016616
Vimu7g00799 413 PANTHER MALATE AND LACTATE DEHYDROGENASE 77 409 - -
Vimu7g00799 413 ProSitePatterns Malate dehydrogenase active site signature. 239 251 IPR001252 GO:0006108|GO:0016615
Vimu7g00799 413 FunFam Malate dehydrogenase 240 408 - -
Vimu7g00799 413 NCBIfam malate dehydrogenase 96 407 IPR010097 GO:0006099|GO:0030060
Vimu7g00799 413 Gene3D - 240 411 IPR015955 GO:0003824|GO:0016616
Vimu7g00799 413 Pfam lactate/malate dehydrogenase, NAD binding domain 96 238 IPR001236 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00799 Vimu-Chr7 7943894 7945135 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00799 K00026 - gmx:100783173 739.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00799 7 7943894 7945135 Vimu7g00799 7 7943894 7945135 ECH