Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00724 ATGGTTTCCGATTCAATCTCTGCCGTGCCGATTCCTTCCGCCGCAAACACTAAGAACCCCGGGAAGAAGAAGAGGACTAACAGGTCTGCAAAATTGAAGCAGTATAAAATCGATGCGCGCCGCGAACAGTGGCTTTCCCAAGGTGTGGTGAAGAGTAAGGGATGCAAGGACGGTGTGGACGATGGCGTCGTTCACGCGCCTCCGCCGTCGGTAAATCACGGCAAGCACTCCTTGGAGCCTCTTAACACGAGGCGCGAAGGAGAAGAAGACGACGGATTGATTCATCATGACAGCGATTCGGAGTCTCCTACCAACTGTCCTGCCGGCGTATTGTGCGGCAATGATTCGGGAACAAACTTCACCGGAAGCAGTAGTGGCGGGAGCAGCAGCAGCAGCAGTTCAAGCAGCGGCGGGTGCTGTTCCGGGAACATTACCGAAGAGGAGGAGGAGGAGGAAGAAGGTGAGGACGAAGATGATGGTTGCTTGGATGATTGGGAGGCCATGGCAGATGCTTTAGCCGCCGATGACAAGCGCGAAATTCCTTGTTCTGATTCACCCCCTGTGGTTTTGCCTCGTGAAGGATCCAATTTAGAGTCTCCGAATTCAAAACCCGAGAGTAGTAGATTGGTTCCTTGGGGCTCTGGTAGTAGCCGAGCGTGGAGGGCTGATGACGCCTTTCGCCCTCAGAGTTTGCCCAATTTGTCTAAGCAGCACAGTATGCCGAACCCTGATCGCCGCTGTGTTGGAGGGGTCCCCTGGGCTCGTGTCTCCACGCCTTCCTCGTGTCCTATTTGCTGTGAGGATCTGGATTTGACGGACACGAGTTTCTTGCCTTGTTTCTGTGGGTTTCGGCTTTGCCTCTTTTGCCACAAGAGGATTCTGGAGGAGGATGGGCGTTGTCCCGGGTGTAGGAAGCCTTATGAGTGTGAACCTGTTGAGACAGAGGCGAGTGTGCATGGAGGCAACCTCACTCTTCGGTTGGCACGTTCCTGCAGCATGATCGAGAGGTCTTGA 1014 0.5444 MVSDSISAVPIPSAANTKNPGKKKRTNRSAKLKQYKIDARREQWLSQGVVKSKGCKDGVDDGVVHAPPPSVNHGKHSLEPLNTRREGEEDDGLIHHDSDSESPTNCPAGVLCGNDSGTNFTGSSSGGSSSSSSSSSGGCCSGNITEEEEEEEEGEDEDDGCLDDWEAMADALAADDKREIPCSDSPPVVLPREGSNLESPNSKPESSRLVPWGSGSSRAWRADDAFRPQSLPNLSKQHSMPNPDRRCVGGVPWARVSTPSSCPICCEDLDLTDTSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPYECEPVETEASVHGGNLTLRLARSCSMIERS 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00724 337 Pfam RING/Ubox like zinc-binding domain 262 308 - -
Vimu7g00724 337 ProSiteProfiles Zinc finger RING-type profile. 262 304 IPR001841 -
Vimu7g00724 337 SUPERFAMILY RING/U-box 256 313 - -
Vimu7g00724 337 FunFam RING/U-box superfamily protein 255 320 - -
Vimu7g00724 337 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 258 334 IPR039780 GO:0004842|GO:0030014
Vimu7g00724 337 MobiDBLite consensus disorder prediction 195 213 - -
Vimu7g00724 337 MobiDBLite consensus disorder prediction 144 165 - -
Vimu7g00724 337 MobiDBLite consensus disorder prediction 47 215 - -
Vimu7g00724 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 319 IPR013083 -
Vimu7g00724 337 MobiDBLite consensus disorder prediction 78 98 - -
Vimu7g00724 337 MobiDBLite consensus disorder prediction 1 35 - -
Vimu7g00724 337 CDD mRING-HC-C4C4_CNOT4 261 305 IPR039515 -
Vimu7g00724 337 MobiDBLite consensus disorder prediction 99 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00724 Vimu-Chr7 7233605 7234810 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00724 - - gmx:100792365 580.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00724 7 7233605 7234810 Vimu7g00724 7 7233605 7234810 ECH