Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00710 ATGTTTCATCCTCGTCATTACACAACATGTCTGCTTCTTCTTCTCTTCCTTCTCGTACTTTCCGACTTTTCCATGTCCCAATCACAATTCCCTTGGGCGGCCAAGAAAAAACGCATGAAAGAGAAAGTTCGCAATATGTTTTACCACGCGTATGACAACTATATGACATATGCATTTCCGCATGACGAGCTTAAACCTATCTCTAAAACTTTCACCAACTCCCTGAGTGAGCTGGGAAATTTGAAGCTTGAACACTTGCCTCAAGACTATAATGGCTCTGCGCTTACACTTATTGAATCGCTGTCTAGCCTTGTTATTATGGGAAATAACACTGAATTTGAGAGGGCAGTGCTTTGGCTTTCAGAAAATCTGACATTTGATGTTGATGCACGCATAAATCTTTTTGAGTGCAACATAAGAGTTCTTGGAGGACTTGTCTCTGCTCATTTGCTTTTATCTGATTCTTCAAAGAAGTTGTTACAAGGGACTTACAACAATCAGCTGCTAGTTCTGGCTGAAGATTTAGGGAAACGCTTCCTACCAGCATTTAATACGCCTACTGGATTGCCATATGCATGGATTAACTTAAAGTATGGAGTAATGGAGAATGAGACTACAGAAACAAGCACTTCAGGGTGTGGTTCCCTGATTCTTGAAATGGGTGCTTTATCAAAAATGACTGGCGACCCCATATACGAATCAGTAGCTTTACGTGCTCTTCGCAAGCTGTGGAGTATGCAGAGCTCATTAAAACTATTTGGAACCACATTGGACGTGGCAACTGGGCAATGGATCGAATATTCATCAGGAATTGGAGCTGGGGTTGATTCCTTCTACGAGTATCTTCTCAAAGCCCATATCCTTTTTGGGAAGGAGGACTTTTGGAAGATGTTTCACTCAGCTTATGTTGCTGCGCAGAAATATTTCAGACACGGTGCTTGGTACCATGAAGCTGATATGAGGACTGGAAGAGCAACTTATTGGCAGCTTACAAGCCTTCAAGCATTTTGGCCTGGCCTACAGGCTAGTAGCTGGACTTCGAATTTTACTTAA 1053 0.4217 MFHPRHYTTCLLLLLFLLVLSDFSMSQSQFPWAAKKKRMKEKVRNMFYHAYDNYMTYAFPHDELKPISKTFTNSLSELGNLKLEHLPQDYNGSALTLIESLSSLVIMGNNTEFERAVLWLSENLTFDVDARINLFECNIRVLGGLVSAHLLLSDSSKKLLQGTYNNQLLVLAEDLGKRFLPAFNTPTGLPYAWINLKYGVMENETTETSTSGCGSLILEMGALSKMTGDPIYESVALRALRKLWSMQSSLKLFGTTLDVATGQWIEYSSGIGAGVDSFYEYLLKAHILFGKEDFWKMFHSAYVAAQKYFRHGAWYHEADMRTGRATYWQLTSLQAFWPGLQASSWTSNFT 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00710 350 PRINTS Glycosyl hydrolase family 47 signature 46 66 IPR001382 GO:0004571|GO:0005509|GO:0016020
Vimu7g00710 350 PRINTS Glycosyl hydrolase family 47 signature 131 149 IPR001382 GO:0004571|GO:0005509|GO:0016020
Vimu7g00710 350 PRINTS Glycosyl hydrolase family 47 signature 181 200 IPR001382 GO:0004571|GO:0005509|GO:0016020
Vimu7g00710 350 PRINTS Glycosyl hydrolase family 47 signature 329 345 IPR001382 GO:0004571|GO:0005509|GO:0016020
Vimu7g00710 350 PRINTS Glycosyl hydrolase family 47 signature 272 289 IPR001382 GO:0004571|GO:0005509|GO:0016020
Vimu7g00710 350 SUPERFAMILY Seven-hairpin glycosidases 37 343 IPR036026 GO:0004571|GO:0005509|GO:0016020
Vimu7g00710 350 Gene3D - 30 348 IPR012341 GO:0005975
Vimu7g00710 350 PANTHER ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2 10 342 IPR044674 GO:0004571|GO:1904380|GO:1904382
Vimu7g00710 350 Pfam Glycosyl hydrolase family 47 46 343 IPR001382 GO:0004571|GO:0005509|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00710 Vimu-Chr7 7090357 7101425 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00710 2 342 Glycoside Hydrolase AT1G27520 76.833 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00710 K10084 - gmx:100793674 637.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00710 7 7090357 7101425 Vimu7g00710 7 7090357 7101425 ECH