Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00692 ATGGGAACGACAACAACTCCTCTTTCGCACACAGTTAGCGTCTTCAACATTCCTCGCTCCGCCACCGCTAAGGACCTTCTCCACTTCCTCGAATCCAAGGTCGGTACTTCCACCGTCTTCGCCCTCGAAATCTTCTCCGACAACGCCAACTGGAAGTCCCGCGGCGCCGGTCGCGTTCAGTTCGACACCCTCGACGCTAAGTCCCTCGCCCTATCTCTCTCCAGCCTTCAACAACTGCTCATCCATTCCCACTTCCTCCGCCTCTCCGATACCTCCGAAGACATCATCTTCCGCCCCCTCCACCGCCTTCAAAATGGTGTCCTCTACGCCGGCATCATGCTTTCCGACCACTGCATGAGCGTTCTCGACTCCTGGGAGGGCGTTGCGGGGTTGGTAGTACCCCAAAGGAGGAAGCTTGACTTCTTGGTGTGGCATGATGACGACTGTTACCGACTCGAGATTTTTTTTGAGGATATTTTGGAGTCTCATGGCTATTGTTTGGGAGAAGAAGCCAAACTCAATGCCATTCTCTTGAAGCTTAAATTTGGGCCAAGGATTTATAAGAAAAAGACGGGGCCAGATGTGGCAACCACGTTTAAGAGTGATAGGTACCATTTTTGTAAGGAGGATTCTGAGTTTCTTTGGGTGCGGACAACTGACTTTTCGGCTCTGAAGTCAATTGGGCACTCGACTTCATTTTGTTGGGAAATTGAGGAAGAACATTTGGCTTCGGATGTTTTTACAAGTTTCCCGCTCTACAAGGAAAATATGACAGATTTGGCTCTGGAGGATGGGGAAGAATTCTGTTCTTCCACTGAAGCAGTTCCTCTTGTAAAGTGTGCTTCGCAATCCAAGTTACCTTACGAGGCCCTTTTCCAGTTGAATTCTCTTGTTCATACTCAGAAAATTAGTCTTGCTTCTGTGGATGATGAATTGATGGACCTTTTGGGAAGCTTAGATGAAGAAATTAGAGCTGTGATTTTTCAGAAATTGCACCAAATGGGCTTCATTTGCTACGATCCTCTTAAATTCGTGAAGACTCAGTTGCATGTGCTGAGTAATAAGAAAAAAAGTCCACCACAATCTTCACAGAAAAGATTGACAGATAATAACATTATGAGCTGTCATAGAGCCTTGATTACCCCAACGAAGATTTATTGCCTTGGTCCTGAGCTTGAAACGTCAAACCATGTGGTAAAGCACTTTGCATCCTATGCTTCAGACTTCATGAGGATTACCTTTGTTGAAGAGAATTGGAATAAGCTTCCAAATTATGCAGTATCGACTGGTGTGCAAAAGGGAATATTTTCAAAGCCTTCTAAAACTGAAATATATAATCGAATATTGACTATTCTTCGAGATGGGATTGTTATTGGATCAAAGAGATTTGAGTTTCTGGCCTTCTCTGCTAGTCAGCTGCGATCAAATTCTGTTTGGTTATTTGCTTCTAATGACAATTTGAAAGCAACAGATATCAGAGAATGGATGGGATGCTTCAACAATATCCGCAGTGTTTCTAAATGTGCAGCGAGGATGGGTCAGTTGTTCAGTTCTTCCATGCAAACTTTTGAAGTGTCCCCTCAAGATGTTGAGATAATTCCAGATATTGAAGTTACCACTGATGGTGTAAGCTACTGTTTCTCAGATGGTATCGGAAAAATTTCCCAATCTTTTGCTAGGCAAGTTGCTCAAAAGCTCAAGTTAGATCATAGTCCTTCAGCATTTCAAATTCGGTTTGGAGGATTTAAAGGTGTTATTACTGTTGATCGCCATTCCTTTAGGAAGTTATCATTGCGCAAAAGCATGCTGAAGTTTGATTCCAAAAATAGGATGCTTTGTGTCACTAAATGGAGTGAGTCAATGCCTTCCTTTCTCAATCGAGAGATTATATCCCTGCTGGCTACCTTAGGAGTAGAGGACGAAGCATTTTTGGCAAGGCAACAGGACCAATTGAATTTGTTGGGAAGAATGTTGACTGATAGTAAGGCAGCTTTGGATGTTTTGGAAAGTTTGAACGGAGCTGATTCAAGGAGCATTCTAGTGAAGATGTTGCATGAATTTAATGAGCCAAACAGTGAGCCTTACCTATCTATGATGCTTAAGGCTTACTATGCTTACCAATTATCTGACTTGAAAAGTAGATGCCGAATATTTGTTCCCAAGGGTCGGGTCTTAGTAGGTTGCTTGGATGAAACTGGTATCTTGAATTATGGTCAAGTATTTGTTCGTGTAACGGTGAAAAAAACTACGGAAAACTTTGACGACAACTTAAGGAAAGTGGATGACGATGATAGCACACGTATAGTAGTGGGAAAGGTGGTGGTCACGAAAAATCCTTGTCTTCACCCTGGAGACGTAAGAGTCCTTGATGCTATCTACAATGAAGAATTAGAAGAAAAGGGTTTGAGGGATTGCCTTGTATTTCCACAAAACGGACATAGGTTGAGAGATACGAGGGGAAAGGGGGATGTTGTTTTTAGCTATGCCATCACTGTCGCACTTATTGTCTATATTGTAGAACTTGCAGCATCTACTCTCGATGTTTTCATTTATTTGCCCCATCCAAATGAATGCTCTGGAGGTGATCTCGATGGAGATTTGTTTTTCATAAGCTGGGACAAAGATCTAATACCATGTCAAACCGAGGCTCCAATGGACTACACAGGACGTAGACCTCGTATAATGGATCATAAGGTGACCCTAGAGGAAATCCAACAATTTTTCGTGGATTACATGATCAATGATACTTTGGGTGCTATCTCCACCGCGCATCTAGTTCACGCTGACCGTGAACCAGATAAGGCCAAGAGTAGAAAATGTCTGGAGTTAGCAGAGCTTCACTCCATGGCTGTTGATTTTGCAAAGACCGGAGCACCTGCTGCAATGCCAAGAGTTTTGAAACCAAGAGAGTTTCCAGATTTCATGGAGAGGGTGGACAAGCCTATGTACATCTCCAAGGGGGTACTGGGAAAACTTTATCGTGCTATAATTGAGTCTCAACTGCAAATAAAATATAGTTTTGTTTGGTCACAAAAGCTTGCTGAAGAAGCATATGATCGTAGCTTTGAAGTGAATGGTTTTGAGGCCTTCCTTGAGACAGCCTCAAGTCAAAAAGAAATGTACGCAGAGAAGATGAGCAGTTTGATGAACTTCTATGGTGCCGAGACTGAGGATGAAATGCTAATTGGTAACTTGCAAAATCGTGCTTCATATTTGCAGCGTGATAACAGGAGATATGGTGATATGAAAGATCGGATTCTGCTCTCAGTGAAGAATCTTCAGTGCGAAGCTAAAGAATGGTTTGAAACTAGTTGCCAACCGCACGAATATCGTCCTATGGCTTCTGCATGGTATCATGTGACCTATCACCCCAGCTATTATTGCCAGGAAAGATCGTGTTTTCTTAGCTTCCCATGGATAGTTGGTGATATTTTGTTGCAGATAAGGTCTGTAAATAAAGCAGTTCAAGGATGA 3474 0.4283 MGTTTTPLSHTVSVFNIPRSATAKDLLHFLESKVGTSTVFALEIFSDNANWKSRGAGRVQFDTLDAKSLALSLSSLQQLLIHSHFLRLSDTSEDIIFRPLHRLQNGVLYAGIMLSDHCMSVLDSWEGVAGLVVPQRRKLDFLVWHDDDCYRLEIFFEDILESHGYCLGEEAKLNAILLKLKFGPRIYKKKTGPDVATTFKSDRYHFCKEDSEFLWVRTTDFSALKSIGHSTSFCWEIEEEHLASDVFTSFPLYKENMTDLALEDGEEFCSSTEAVPLVKCASQSKLPYEALFQLNSLVHTQKISLASVDDELMDLLGSLDEEIRAVIFQKLHQMGFICYDPLKFVKTQLHVLSNKKKSPPQSSQKRLTDNNIMSCHRALITPTKIYCLGPELETSNHVVKHFASYASDFMRITFVEENWNKLPNYAVSTGVQKGIFSKPSKTEIYNRILTILRDGIVIGSKRFEFLAFSASQLRSNSVWLFASNDNLKATDIREWMGCFNNIRSVSKCAARMGQLFSSSMQTFEVSPQDVEIIPDIEVTTDGVSYCFSDGIGKISQSFARQVAQKLKLDHSPSAFQIRFGGFKGVITVDRHSFRKLSLRKSMLKFDSKNRMLCVTKWSESMPSFLNREIISLLATLGVEDEAFLARQQDQLNLLGRMLTDSKAALDVLESLNGADSRSILVKMLHEFNEPNSEPYLSMMLKAYYAYQLSDLKSRCRIFVPKGRVLVGCLDETGILNYGQVFVRVTVKKTTENFDDNLRKVDDDDSTRIVVGKVVVTKNPCLHPGDVRVLDAIYNEELEEKGLRDCLVFPQNGHRLRDTRGKGDVVFSYAITVALIVYIVELAASTLDVFIYLPHPNECSGGDLDGDLFFISWDKDLIPCQTEAPMDYTGRRPRIMDHKVTLEEIQQFFVDYMINDTLGAISTAHLVHADREPDKAKSRKCLELAELHSMAVDFAKTGAPAAMPRVLKPREFPDFMERVDKPMYISKGVLGKLYRAIIESQLQIKYSFVWSQKLAEEAYDRSFEVNGFEAFLETASSQKEMYAEKMSSLMNFYGAETEDEMLIGNLQNRASYLQRDNRRYGDMKDRILLSVKNLQCEAKEWFETSCQPHEYRPMASAWYHVTYHPSYYCQERSCFLSFPWIVGDILLQIRSVNKAVQG 1157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00692 1157 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 93 IPR000504 GO:0003723
Vimu7g00692 1157 PANTHER RNA-DEPENDENT RNA POLYMERASE 10 1149 IPR007855 GO:0003968
Vimu7g00692 1157 SUPERFAMILY RNA-binding domain, RBD 7 88 IPR035979 GO:0003676
Vimu7g00692 1157 Pfam RNA dependent RNA polymerase 380 996 IPR007855 GO:0003968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00692 Vimu-Chr7 6944517 6948701 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00692 K11699 - gmx:100808274 1951.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00692 7 6944517 6948701 Vimu7g00692 7 6944517 6948701 ECH