Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00641 ATGCGACCCACAGGAAGGGATCGAAGGATTGTCCGCAGAATGGCAAACTTTCCTCGAAGCATAATGGAGGGTATTTCAAGGGCAATGGAGGATGGTATAGGCTTTATAGGAAGAGGAAGAGGAAGAAGAAGAAATCAACATGCTAATTTTCCTGTGCAGCCTCAAGAACATGTTCCACAATCACTTGATCAAGTAGTGGTTCAAGAGGAATGGAGTTTTCTAGAGAGTTTTGAGCAGCAATATGGCACCAAACACCCTTTCTTTTATGCTTGCCGTCTCGGGGAAGCCATGAAATTAGCAGAACAAGATCACAAGTTCTTGTTCATGTTCCTCCACTCACCTGACCACCCTTTTGCAAACGTTTTCTGCAAGGAAACACTGTGTTCGGAGCCAGTGATTCAGTTTCTTGATGTGAATTTTGTTTGCTGGGGAGGACTTGCTTATAGAGGAGAGGGCTTGCAAATGGTTGCAACGCTTAGCCCTGACACTTTTCCTTGTTGTGCTGTCATAGCCCCTACTCCAGGCAAGAGCATAGCAGTTCTGCAACAGGAGACTCAAGAAGATTCAAATTATGACTTGTCGGATGGGAGATTCTATCTTACTTTGGTTGATCAACTAGAAGGACCCCTTTCACCGGCTGAGCTAGTGGGGATTCTACAAAGAACATTGGAAGAACAAGGGGTGGCTTTCGGAAGTGCTAAAGCTAAGCAGGAAGAAAAGATTCGAGCAGACCGTAGGCTTAGAGAAGAACAGGATGCTGCATATCTTGCAGCTTTGCAAATTGACAAGGAAAAAGACAAACTCAATAATTTACCTTCAAAAGAGGGAGTTCAGAAGCAAATAGAAGCTCACAGCACCAAAAATTATGGGAAACTGATGAACAATTCTATGAATGTGACTAAACAGAACAGCAGAGTGAATGAGTCCACTAAGGGAGTTGCAAGTAAAGGAATGGAGTCTCAACCCACGCAGATTCTGATAAGGTTTCCAAACGGGGAAAGAAGAGAGCATAGTTTCCTTTGCACAGACAAAATCCAATCCATTTTCTCATACATTGATTCCTTAGGATTGCCAGGGATTGGAAACTACAGATTGATATCAAACTTCCCAAGAAGAGCTTATGGTGTTGACCAAATGAGAATGACTCTCAAAGAGGCTGCCATGTATCCTAAGGCTAGTGTGTTCGTGGAGCCTTTAGGCGCTAGAGTCCCATAA 1215 0.4362 MRPTGRDRRIVRRMANFPRSIMEGISRAMEDGIGFIGRGRGRRRNQHANFPVQPQEHVPQSLDQVVVQEEWSFLESFEQQYGTKHPFFYACRLGEAMKLAEQDHKFLFMFLHSPDHPFANVFCKETLCSEPVIQFLDVNFVCWGGLAYRGEGLQMVATLSPDTFPCCAVIAPTPGKSIAVLQQETQEDSNYDLSDGRFYLTLVDQLEGPLSPAELVGILQRTLEEQGVAFGSAKAKQEEKIRADRRLREEQDAAYLAALQIDKEKDKLNNLPSKEGVQKQIEAHSTKNYGKLMNNSMNVTKQNSRVNESTKGVASKGMESQPTQILIRFPNGERREHSFLCTDKIQSIFSYIDSLGLPGIGNYRLISNFPRRAYGVDQMRMTLKEAAMYPKASVFVEPLGARVP 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00641 404 SMART ubx_3 315 398 IPR001012 GO:0005515
Vimu7g00641 404 SUPERFAMILY Ubiquitin-like 317 399 IPR029071 -
Vimu7g00641 404 PANTHER FAS-ASSOCIATED PROTEIN 8 397 - -
Vimu7g00641 404 ProSiteProfiles UBX domain profile. 318 396 IPR001012 GO:0005515
Vimu7g00641 404 SUPERFAMILY Thioredoxin-like 68 180 IPR036249 -
Vimu7g00641 404 Pfam UBX domain 320 398 IPR001012 GO:0005515
Vimu7g00641 404 SMART 45neu3 72 197 IPR006577 -
Vimu7g00641 404 CDD UBX 325 397 - -
Vimu7g00641 404 Gene3D - 318 398 - -
Vimu7g00641 404 Gene3D Glutaredoxin 63 228 - -
Vimu7g00641 404 Coils Coil 233 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00641 Vimu-Chr7 6470342 6472390 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00641 K18726 - gmx:100775212 605.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00641 7 6470342 6472390 Vimu7g00641 7 6470342 6472390 ECH