Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00613 ATGGTTTCAGCTAGAATTTTTCCTGGCAAAGCTGTGGAGCTAATTCTGCCCAAAGATCCAGGGCTGAAATATAACCCTACAAGTGTTATATTTTTAAAGATACCAACCATATCTCATCTTCAATGGCACTCGTTCAGTATAATATCTAGTTCCAGGGCTGATAACCACATTTTGTCAGTGATAATAAAATGTGAAGGGTGGTGGACTAATTCTCTTCACGACCTGATAAATGCTGAACTAGACAAAACTGAAGATAAAAGGAAGGGAATACCTGTTGCAATCGAAGGACCTTATGGACCTGCTTCTTTGGACTTTTTGAGATATGACACCCTTCTTCTGGTTGCTGGAGGAAGTGGAATAACCCCATTTCTGAGCATTTTGGCAGAAGCTAATTCAGCTGCCAGCAAAAGTAAATTTCCCTCGACAATACAACTTGTGTATGTCATCAAGAAAGCAGAAGACTTCTGTCTGTTACATTCAATCTCACATATGTTACTCAACCAATCAACTAAAAGTTTCCATTTGAACCTAAAATTGTTTGTAACCCGAGAAACACAAGCAGGGGTAGGAATTAGGGAGCTACTAAATGAGTTCTTTAAAGCAAGAACACTGCAAGTGAACAGCGTGTGTTCAAATTATGCAGCATACGGGCCCGAAAGTCCGTCTTGGATGGCTGCCATTGCAGGATTTTGCTCCATTACTTTTCTTATTTTCCTAATCTGTTTCAACCATATCATAATTTCATCTGGAAAGCGCTCCAAAATGGACAAAGAAAAGACTCCGTCTTGGGTCGTGGATCTTCTTCTGATGGCTGCTTTTGTCCTAGCTTTAGCTTGCAGCGCCTCGGTGGCAGGCTTTTTGAGATGGAGAAGGCTGAAGAAAGGGATTCCCCAAATATCGCATAGAGAAATTGAAGCCCTTGATCTATGTTCAGATGAAGCTAGGAATGCCCTTGAAGCACACGAAGTATATTTTGGGGGAAGGCCTAACTTTAAAGAAATATTTGGCAAGCTCCGAAATGAAAGCGATGGATCTAATATTGGAGTATTGGTTTGTGGACCAGAGAGCATGAAGGAATCGGTGGCACTCGCATGCAAGCAGGAATCCGACTGTTTTAATGCAAAGAGAACAGAATCCTGCTTCACTTTCCACACTCTCAACTTCACGCTTTAG 1173 0.4152 MVSARIFPGKAVELILPKDPGLKYNPTSVIFLKIPTISHLQWHSFSIISSSRADNHILSVIIKCEGWWTNSLHDLINAELDKTEDKRKGIPVAIEGPYGPASLDFLRYDTLLLVAGGSGITPFLSILAEANSAASKSKFPSTIQLVYVIKKAEDFCLLHSISHMLLNQSTKSFHLNLKLFVTRETQAGVGIRELLNEFFKARTLQVNSVCSNYAAYGPESPSWMAAIAGFCSITFLIFLICFNHIIISSGKRSKMDKEKTPSWVVDLLLMAAFVLALACSASVAGFLRWRRLKKGIPQISHREIEALDLCSDEARNALEAHEVYFGGRPNFKEIFGKLRNESDGSNIGVLVCGPESMKESVALACKQESDCFNAKRTESCFTFHTLNFTL 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00613 390 CDD NOX_Duox_like_FAD_NADP 2 183 - -
Vimu7g00613 390 Pfam FAD-binding domain 3 102 IPR013112 GO:0016491
Vimu7g00613 390 Pfam Ferric reductase NAD binding domain 108 365 IPR013121 GO:0016491
Vimu7g00613 390 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 92 204 IPR039261 -
Vimu7g00613 390 Gene3D - 273 388 IPR039261 -
Vimu7g00613 390 Gene3D - 92 228 IPR039261 -
Vimu7g00613 390 PRINTS Cytochrome B-245 heavy chain signature 113 130 IPR000778 GO:0016020|GO:0016491
Vimu7g00613 390 PRINTS Cytochrome B-245 heavy chain signature 90 103 IPR000778 GO:0016020|GO:0016491
Vimu7g00613 390 PANTHER NADPH OXIDASE 6 388 - -
Vimu7g00613 390 SUPERFAMILY Riboflavin synthase domain-like 3 100 IPR017938 -
Vimu7g00613 390 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 1 104 IPR017927 GO:0016491
Vimu7g00613 390 FunFam ferric reduction oxidase 8, mitochondrial 92 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00613 Vimu-Chr7 6183161 6189620 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00613 1 390 Miscellaneous Gene Families AT5G50160 41.007 9.82e-96 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00613 K00521 - gmx:100816560 686.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00613 7 6183161 6189620 Vimu7g00613 7 6183161 6189620 ECH