Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00607 ATGGAGTCTGCTCTAGTGATCAAGGTGAAATATGGGGATACCCTCCGGCGCTTCTCTGCGTCTGTGGACGAGATTAATCGACTGGATCTCGACATAGTTGGGTTGAGACAGAAGATATGTTCTATCTTCGGTTTCAGTGCTGATACAAATTTAGTTCTGAGATATGTTGATGAAGATGGTGATTTGGTGACTCTGGTTGATGATGATGATTTGCGTGATGTGATGAGGCAGCAATTGAAATTCTTGAGAATTGAGGTACTAATGAACAATGATGGCGCTGCTAAATCGACTGCTTGGTCTACTGGAAGTGACACCCCCTTAAAATCTCCTTCTGTCACAAACCCACCTCTGGGTAGAAATACTATATTACACGAGGCTCTATCTAAATTGTCGCTTTCAAAAACAGCATCTTCGACTCCCGTGGTTGATAATATTGCCAATTCAATTTTGAAAATAGGACAATCTGTTCTAAATTCTCATTTCCAGCCTCGTGATGCAGCTGGTACAAGTTCAAAAACGGGTCCTGAAGAACATGCCACTTCTAAGGCAAAAGGTTCTCGATCTTCATATGTGGACTCAGCCTCCAATTCTACTGTCCATGGTGAGAGTGCCACTCCGTTAAGAAATCCTGTTCCAAACCCATCTCTGAGCCCAAATGCAGATAAAGTTGACATTTCATCTCCTGTGCCTGATCCAGTACGTGAAATTGTGTCCAAGTTATTGTATCAAAAGGCTGCATCTTCTAGTCAGCTGCCTGTTAATCTTCCTGATTTAATTTCCCTGGTGGGACATTCTGTTTTAAATTCTTATTGCGAGCCTCATGTTGCAACTGGTCCATTCTCTAAAAATGGTGTTCCTGAAGAACCTATCTCTGGTGAAGCAAGAGATCCACAGATGCCATCTGTGGACTTGGCTTCCAATGCCACTCAACAGGTGGAGACTGAAAACATAATTAGAGATGTAGCCAGTCAACATTTGGAAGCTGGGAATGTAATCAGTGCAACAACAGCTGCGGAAGTTGCCACAGTTGATCTCAATATCCCTCCTTGTGATCCCTATTCATCTCAGTCCACAAATCTGAATAAGGCTCCACTTTCATCAGAAGTCCCTGAGGGTGATTGCAGGAAGGGTAAAATGTCAACTGTCTATAGTTCTGCTGGTAAGGTTGACAGCAGTGGTACATCCTCAAGTCCTGCTGGTCCTAATGACAGTTCAACCCAGACTACTTCATGGAATGCTGGTGGTTTCTTTGAATGTCCATTTTCTGGGACATATATTAATTCTTGGACCCCACATTTTGGAAACTCTCAAATGCCCCCATTTAAAAGGAGCCATCGTCACACTGAGGCAATGACTGGTATGTTCCACAAAGGTGTGCGTTGTGATGGTTGTGGTGTCTATCCAATAACCGGACCTCGGTTCAAATCCAAAGTGAAGGAAAATTATGATCTCTGCCACATTTGTTACAACGAAACGGGTAATGGGACAGATTATATCAGAATGGACCGTCCGGCATCTGCTCGTTTCCCTCGATGTGTATATGAGCAATCCAAAAACTTTCCAACATTACCGCCTCATACTTTTAAGAAAAGTGCCATTTTGAAGCATGCAAGACCAAAGTTAGATAGTCAGTTCATTTTGGATGTCAATGTGCTAGACGGTACAATGATGGCTCCATCTACTGCATTTACAAAGATCTGGCGGATGCGCAATAATGGCACTGTAGCTTGGCCCAAGGGAACTAAACTTGTTTGGATTGGAGGAGACAAGTTCAGTGACTCTCATTCAGTTGACTTAGAGGTTCAGGATGGTGTCCCTATCGAGAAGGAACTTGACATTGCAGTTGATTTTACAGCACCTCGGAGACCTGGTCGATACACATCATACTGGAGGTTGGCAACTTCATCTGGACATAAATTTGGCCAACGTGTTTGGGTCCTTGTACAGGTTGATGCCTCTCTCAAGGACTCATTTTATGATAACTCTCAAGGATTGAACTTGAATATTCCACTTGATGTCAGTGGATCTGAAGGACCTCTGCTTATAGATATCAATGTTAGGCCTGCCGAGGATGATACTTTTCTTCAAACCCGCATTCCAAATGATCTGATTCAACCTGCTGAACAGGTTGATAAGGAACCAAGGTTGGAAGTGGAAAAGGAATTCCCTATAAATGAAGCTACATTTGTTGGCTCTTCTGCCTCAGCCTTTGCTGCAACCTCCCTGGCACCTTCATCAATCTCTTATCCTATTATTGATTTATCTGAAGCAACCCCAGCTGTTCCCTCCGATCAGCAATCCTCCACTGTGGATGTACCATCATCATCTATTATGGAGACCGGTGGAATTAACTCTCTGGAGGAGAGTCTACTTAAAGAACTTGAGGCGATGGGTTTTAAGCAGGTTGATTTGAACAAAGAGGTCTTGAGGATGAATGAGTATGATCTGGAGCAATCCATCGTCGATCTATGTAGTGATGTCTATAATGTTTCTGAGTGGGACCCTATCCTTTTAGAGTTACAAGAGATGGGTTTCCGTGACCAAGAGATGAACAAGAGGTTGCTTAAGAAAAACAATGGAAGCATAAAGCGTGTTGTTATGGATTTAATCCAAGGAGAGTAG 2622 0.431 MESALVIKVKYGDTLRRFSASVDEINRLDLDIVGLRQKICSIFGFSADTNLVLRYVDEDGDLVTLVDDDDLRDVMRQQLKFLRIEVLMNNDGAAKSTAWSTGSDTPLKSPSVTNPPLGRNTILHEALSKLSLSKTASSTPVVDNIANSILKIGQSVLNSHFQPRDAAGTSSKTGPEEHATSKAKGSRSSYVDSASNSTVHGESATPLRNPVPNPSLSPNADKVDISSPVPDPVREIVSKLLYQKAASSSQLPVNLPDLISLVGHSVLNSYCEPHVATGPFSKNGVPEEPISGEARDPQMPSVDLASNATQQVETENIIRDVASQHLEAGNVISATTAAEVATVDLNIPPCDPYSSQSTNLNKAPLSSEVPEGDCRKGKMSTVYSSAGKVDSSGTSSSPAGPNDSSTQTTSWNAGGFFECPFSGTYINSWTPHFGNSQMPPFKRSHRHTEAMTGMFHKGVRCDGCGVYPITGPRFKSKVKENYDLCHICYNETGNGTDYIRMDRPASARFPRCVYEQSKNFPTLPPHTFKKSAILKHARPKLDSQFILDVNVLDGTMMAPSTAFTKIWRMRNNGTVAWPKGTKLVWIGGDKFSDSHSVDLEVQDGVPIEKELDIAVDFTAPRRPGRYTSYWRLATSSGHKFGQRVWVLVQVDASLKDSFYDNSQGLNLNIPLDVSGSEGPLLIDINVRPAEDDTFLQTRIPNDLIQPAEQVDKEPRLEVEKEFPINEATFVGSSASAFAATSLAPSSISYPIIDLSEATPAVPSDQQSSTVDVPSSSIMETGGINSLEESLLKELEAMGFKQVDLNKEVLRMNEYDLEQSIVDLCSDVYNVSEWDPILLELQEMGFRDQEMNKRLLKKNNGSIKRVVMDLIQGE 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00607 873 SUPERFAMILY RING/U-box 450 506 - -
Vimu7g00607 873 SMART zz_5 455 500 IPR000433 GO:0008270
Vimu7g00607 873 MobiDBLite consensus disorder prediction 384 408 - -
Vimu7g00607 873 FunFam protein NBR1 homolog 832 873 - -
Vimu7g00607 873 Gene3D - 1 88 - -
Vimu7g00607 873 SMART PB1_new 4 89 IPR000270 GO:0005515
Vimu7g00607 873 Gene3D - 448 506 IPR043145 -
Vimu7g00607 873 Pfam Ig-like domain from next to BRCA1 gene 550 650 IPR032350 -
Vimu7g00607 873 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 3 872 - -
Vimu7g00607 873 MobiDBLite consensus disorder prediction 280 299 - -
Vimu7g00607 873 Pfam Zinc finger, ZZ type 456 491 IPR000433 GO:0008270
Vimu7g00607 873 MobiDBLite consensus disorder prediction 162 227 - -
Vimu7g00607 873 Gene3D - 781 826 - -
Vimu7g00607 873 ProSiteProfiles Zinc finger ZZ-type profile. 456 506 IPR000433 GO:0008270
Vimu7g00607 873 CDD NBR1_like 539 651 IPR032350 -
Vimu7g00607 873 FunFam next to BRCA1 gene 1 protein-like 536 655 - -
Vimu7g00607 873 MobiDBLite consensus disorder prediction 162 176 - -
Vimu7g00607 873 MobiDBLite consensus disorder prediction 95 119 - -
Vimu7g00607 873 Pfam PB1 domain 6 77 IPR000270 GO:0005515
Vimu7g00607 873 MobiDBLite consensus disorder prediction 184 222 - -
Vimu7g00607 873 SUPERFAMILY CAD & PB1 domains 4 80 - -
Vimu7g00607 873 SUPERFAMILY UBA-like 833 871 IPR009060 GO:0005515
Vimu7g00607 873 CDD UBA_NBR1 832 870 - -
Vimu7g00607 873 Gene3D Immunoglobulins 536 654 IPR013783 -
Vimu7g00607 873 ProSiteProfiles PB1 domain profile. 4 86 IPR000270 GO:0005515
Vimu7g00607 873 MobiDBLite consensus disorder prediction 95 118 - -
Vimu7g00607 873 Gene3D - 827 873 - -
Vimu7g00607 873 MobiDBLite consensus disorder prediction 353 408 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00607 K17987 - gmx:100778692 1178.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00607 7 6115110 6119202 Vimu7g00607 7 6115110 6119202 ECH