Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00603 ATGAATCCTTTGAAGGCAATTGTTGCTAACCTCAGATTCCTCGATTCGCCAGTCACCAGGAGACTCATTGCAACTCGGTCTATCCGATTCACTCAGAACCAGGTGACTCATTTCTCTCTTTACACTCCATCTCCCTTTCTGGATCATTCTCATGATTTCCCCTTTCCCAACCTCCACCGGAAGATATACTTTTCTTCGAAATCAATTCCCATTGCCGAGCTTATTTTGACGAGCCATTGGTCCAAGGAGTTAGAGCACGAGTTAGAAAAATGCTACCCATCCATGACCCATGAAACTGTTGTTTACGTTTTGAAGCGGTTGGAAGCAAACCCAGACAAAGCATGGCGCTTTTTCGATTGGGTCAGTACAAAAAAATGGTTTAGAGCAAGTTCTACCGTTTATGGTTTAATTCTTAGGATCTTGGCCACTGAGGAGACGATAAGACAATTTTGGATTACTCTATGGACTATGAAGAGAAAAGGGTTTTATTTTTATGAAGAAATTTATTTTTCAATTTTAGTCGTTTTTAAAAGGAAAAAGATGGACAAGGATTGCACGTCTCTTACCCACTTCTGTAATCGGAGTATCCGGGAAGATGCTATGCATAGTGTTGTTGCCAATGTTGTTGGCATCATTTCAGTGTCTAAATGGGGTGATGGTGTTAATGGTGAACTTGCAAAGGTTAAAATTCAGCTCTCCGATAATTTTGTAATAAGGGTTTTGAGAGAGCTTCGAAGCACTCCTTTAAAGGCTTACGAGTTCTTTCGTTGGGTTGGTAGACAATCTGGTTATGAGCATAATACAATGACTTATAATGCACTTGCAAGAGTTCTGGCGAGGACAGATTCAATCGAGAAGTTTTGGAGTGTCATTGAGGAGATGAAGAGTGTGGGTCATGAATTAGATATTGATACTTACTTAAAGATATCAAGGATGCTTCAAAGGCATAGGATGGTGGAAGATGCTGTCAAGCTTTATGAGCTTATGATGGATAGTTCGTATAAGCCATCTGTTAAGGATTGCAGCTCTCTTTTGAAAAGTCTCTCTGAAAGTGATAAGCCAAATATGGATTTAGTTTTCAGGGTTTCTAAGAAATATGAGTCAACAGAGCACACACTCTCCAAGGCAATCTATGATGGGATCCACAGGTCTTTGACAAATTCTGGGAAACTTGACGAAGCTGAGGATATTGTTAATCATATGAGAAAGGCTGGTCATGAACCTGATAACATCACATATGGCCAAGTCATTGCTGGATTTTGTAAGATGAGGAGGCTTGAAGAAGCATGTAAAGTGATGGAGGAAATGGAATCTTGTGGTTGCATCCCTGATACTAACACTTGGACCCTATTAGTCCAAGGGCATTGTGTTGCGAATGAAGTAGACAGGGCATTACGATGTTTACATAAGATGATTGAAAAGGGCTGCAATCTTGATGCTGCTGTTTTACGTGTTATGACAGACAGTTTTCTTGGTCAAAAGCGAATAGATGATGCATACAAGTTACTAGTAGAGGTTGCTACCAAACACGGTGCATCTCCGTCACGCAGTACATACGAGAAACTGATTGTAAATCTATTGAAAATTGAGAAATTTGAGGAGGCTCTTAACCTTCTTTGTTTGACTAGGAAACACAAACACACACCAATTCTTGAACCCTTTGTGCAGTATATTTCTAATTTTGGGTCTGTTGAAGATGCAGTAAAATTCCTGAAGAGTAAGGGAAGTCCCCGGTCGTATTTGATCTACTTTCGTGTTTTTAAATCTTTGCTTGGGAAAGGTAGACTTTCTGAGGCCGAAGACCTATTGAGCAAAATACCCTCCTATATGAGTAAAAAAAAAGAAATCCGTGAACTTTTCGATTCAAATGTGTTTCGACTACGGCCTCTGAGTTGA 1896 0.3998 MNPLKAIVANLRFLDSPVTRRLIATRSIRFTQNQVTHFSLYTPSPFLDHSHDFPFPNLHRKIYFSSKSIPIAELILTSHWSKELEHELEKCYPSMTHETVVYVLKRLEANPDKAWRFFDWVSTKKWFRASSTVYGLILRILATEETIRQFWITLWTMKRKGFYFYEEIYFSILVVFKRKKMDKDCTSLTHFCNRSIREDAMHSVVANVVGIISVSKWGDGVNGELAKVKIQLSDNFVIRVLRELRSTPLKAYEFFRWVGRQSGYEHNTMTYNALARVLARTDSIEKFWSVIEEMKSVGHELDIDTYLKISRMLQRHRMVEDAVKLYELMMDSSYKPSVKDCSSLLKSLSESDKPNMDLVFRVSKKYESTEHTLSKAIYDGIHRSLTNSGKLDEAEDIVNHMRKAGHEPDNITYGQVIAGFCKMRRLEEACKVMEEMESCGCIPDTNTWTLLVQGHCVANEVDRALRCLHKMIEKGCNLDAAVLRVMTDSFLGQKRIDDAYKLLVEVATKHGASPSRSTYEKLIVNLLKIEKFEEALNLLCLTRKHKHTPILEPFVQYISNFGSVEDAVKFLKSKGSPRSYLIYFRVFKSLLGKGRLSEAEDLLSKIPSYMSKKKEIRELFDSNVFRLRPLS 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00603 631 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 444 478 IPR002885 -
Vimu7g00603 631 Gene3D Tetratricopeptide repeat domain 381 510 IPR011990 GO:0005515
Vimu7g00603 631 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
Vimu7g00603 631 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
Vimu7g00603 631 Gene3D Tetratricopeptide repeat domain 226 376 IPR011990 GO:0005515
Vimu7g00603 631 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 374 408 IPR002885 -
Vimu7g00603 631 PANTHER OS01G0970900 PROTEIN 75 622 IPR044578 GO:0008380
Vimu7g00603 631 Pfam PPR repeat 270 298 IPR002885 -
Vimu7g00603 631 Pfam Pentacotripeptide-repeat region of PRORP 315 491 IPR033443 -
Vimu7g00603 631 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 409 443 IPR002885 -
Vimu7g00603 631 NCBIfam pentatricopeptide repeat 447 479 IPR002885 -
Vimu7g00603 631 NCBIfam pentatricopeptide repeat 270 302 IPR002885 -
Vimu7g00603 631 NCBIfam pentatricopeptide repeat 411 445 IPR002885 -
Vimu7g00603 631 NCBIfam pentatricopeptide repeat 313 337 IPR002885 -
Vimu7g00603 631 NCBIfam pentatricopeptide repeat 383 409 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00603 Vimu-Chr7 6099001 6100896 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00603 250 626 Glycosyltransferase AT1G05670 24.935 2.01e-22 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00603 - - vum:124838645 1179.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00603 7 6099001 6100896 Vimu7g00603 7 6099001 6100896 ECH