Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00574 ATGTTCCCGCTTCAGCTACTCCCTCTTCATTCACTCCGACCTCCTCCACCCTTCACTTCCAAAATGAACAATTCCGCAAAGCTCCAAGAACGGTTCGTGGCTTCCATTAAAACCCTAACACCCCACATTACCTGTCTCGCGGTCCACCGTAACCTCCTCTACGCCGCCTCCCTAAACCTCATCAACGTCTTCGACCTCTCCCATTACTCCCACATCGACGCCTTCAACCAAAGCCCTGCCTCAGGCTTTGTCAAGTCCATCGCCTTCACCAACTCAAGGGTTTTCACCGCTCACCAAGACCGCAAGATTCGCGTCTGGCTCATCACTCCCTCCAAACGACATCGTCTCCTCTCCTCCCTCCCCACCGTCACTGACCGTCTCCGCCGTTGCATCGTTCCCCGAAACTACGTCAGCGTGCGCCGCCACAAGTCCAGGCTCTGGATCCAGCATTGCGACACTGTCTCCGGTTTAGCCGTGAACCAGAGGCTCATGTATTCGGTTTCGTGGGATAAGAGCTTTAAGGTCTGGGACTTGTTCAGTTTCCGGTGTTTGGAGTCCGTCAAAGCGCATGAGGACGCGATCAACGCTCTGGTTGTTAACCGAGATGGTATCGTATACACCGCCTCCGCGGATGGGAGCATCAAGGTTTGGAGAAGAGACTGCGAGGGGAAACGGCACGTGTTGGTGAGCACCATTGGAAGGCAGAAGTCGACGGTGAATGCGCTTGCGTTGGACGGCGGGGGCGCGGGGTTGTTTTCCGGAGGTTGCGACGGCGAGATATGCCGGTGGGAGTGGGGGTGCGAAGAAAACGGCGCGGTGAAAATGGAGACGTTGAGGGGTCACAGTGGAGCCATACTGTGTCTTATCCACGTGGCGGGTTTGTTGGCGAGTGCGTCCTCGGATCTAACGGTTAGGATCTGGCAACGGGAGAGAGGGAGGAGTGGGTATAGATGCAGGGCGGTGTTGGAAGGGCACGAGAAACCGGTGAAGTCGTTGGTGGCCTTTCCGGGAGGTGACGATGACTCAAACGGCGTCGTTAGGCTATTTAGTGGAAGCCTAGACGGGGAGATTAAGGTGTGGGAGTTGTTCGGTTCGGTCTGA 1101 0.5622 MFPLQLLPLHSLRPPPPFTSKMNNSAKLQERFVASIKTLTPHITCLAVHRNLLYAASLNLINVFDLSHYSHIDAFNQSPASGFVKSIAFTNSRVFTAHQDRKIRVWLITPSKRHRLLSSLPTVTDRLRRCIVPRNYVSVRRHKSRLWIQHCDTVSGLAVNQRLMYSVSWDKSFKVWDLFSFRCLESVKAHEDAINALVVNRDGIVYTASADGSIKVWRRDCEGKRHVLVSTIGRQKSTVNALALDGGGAGLFSGGCDGEICRWEWGCEENGAVKMETLRGHSGAILCLIHVAGLLASASSDLTVRIWQRERGRSGYRCRAVLEGHEKPVKSLVAFPGGDDDSNGVVRLFSGSLDGEIKVWELFGSV 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00574 366 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 15 362 IPR045182 -
Vimu7g00574 366 SUPERFAMILY WD40 repeat-like 37 362 IPR036322 GO:0005515
Vimu7g00574 366 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 322 366 - -
Vimu7g00574 366 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 187 217 - -
Vimu7g00574 366 ProSiteProfiles Trp-Asp (WD) repeats profile. 278 317 IPR001680 GO:0005515
Vimu7g00574 366 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 217 IPR001680 GO:0005515
Vimu7g00574 366 PRINTS G protein beta WD-40 repeat signature 295 309 IPR020472 -
Vimu7g00574 366 PRINTS G protein beta WD-40 repeat signature 348 362 IPR020472 -
Vimu7g00574 366 PRINTS G protein beta WD-40 repeat signature 164 178 IPR020472 -
Vimu7g00574 366 ProSiteProfiles Trp-Asp (WD) repeats profile. 322 366 IPR001680 GO:0005515
Vimu7g00574 366 Pfam WD domain, G-beta repeat 182 217 IPR001680 GO:0005515
Vimu7g00574 366 Pfam WD domain, G-beta repeat 276 307 IPR001680 GO:0005515
Vimu7g00574 366 Pfam WD domain, G-beta repeat 317 360 IPR001680 GO:0005515
Vimu7g00574 366 Gene3D - 136 365 IPR015943 GO:0005515
Vimu7g00574 366 Gene3D - 23 126 IPR015943 GO:0005515
Vimu7g00574 366 FunFam BnaA09g28200D protein 137 222 - -
Vimu7g00574 366 ProSitePatterns Trp-Asp (WD) repeats signature. 348 362 IPR019775 -
Vimu7g00574 366 SMART WD40_4 29 65 IPR001680 GO:0005515
Vimu7g00574 366 SMART WD40_4 68 107 IPR001680 GO:0005515
Vimu7g00574 366 SMART WD40_4 315 361 IPR001680 GO:0005515
Vimu7g00574 366 SMART WD40_4 225 264 IPR001680 GO:0005515
Vimu7g00574 366 SMART WD40_4 271 308 IPR001680 GO:0005515
Vimu7g00574 366 SMART WD40_4 180 218 IPR001680 GO:0005515
Vimu7g00574 366 SMART WD40_4 141 177 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00574 Vimu-Chr7 5843840 5844940 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00574 150 366 Acyl Lipid Metabolism Gene Families AT3G18860 24.348 3.12e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00574 - - aprc:113874855 573.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00574 7 5843840 5844940 Vimu7g00574 7 5843840 5844940 ECH