Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00529 ATGCGTTTAGAGAAGAGTACAGGAAACAAATTTGAGAAATGGAATGGCGCAATGACCAGTAATGGAGAAAGAAGCAATCGCCAGCAAACACTGAATCTCCTATATCTAAGGATAAACAAATTGAGAACAATGAACAACAATAATCCACCAAAAAATGCTGCAACGCCGTCGTTTTTCACCAACCCGGCTGCACCCTCAATCCCCATGAACCACCCATCACCCCACCTTCTCTCACAGACGCAGCCTCTACCGCAAGCTGGTGCCTCTCACTTCCATGGCCATTTTCAGCTATCGCAACCGCAAATCCACGTCCTCGCACAGCCACACCCTATTCCTCCCCCACAGGTGCATAACAATTCCAATACCAATGCCAGCGTTACAACACCTGCGCCTCCCAAGCGTGCAAATCACAAACCCCCTTCACGCCCTCCAGGTTCCTCCAACACCACCCAAACCTCTGCTTTCAAGACCATGGAACTTACCGTGGCGCCTCCTCGGAAAAAGAGAAGCTTTCCCGATAAGCTCATTCCCGACAAGGTGGCCAAGCTTGTGCCCGAGTCTGCTATTTATGCCAAGTTGCTTGAACTTGAGACCCACATAGATTCTGTTTTGGTTAGGAAGAAAATTGATGTGCAGGAGAATTTGAGAAACCCTCGCTGTGTTAGGAGAACGCTTAGGATTTATGTGTATAATACATTTTCGAAACAGGTGAAAGTGGAACCTGGGAAGATTGATGTGGAGGAGCTTTCTTGGGTTCTCAGGATAACCGGAAGGGTGTTGGAAGATGGTAAGGATCCTGTGGCAGATGGAGTTTTGCCTAAAGAAAATCAAAGATTCTCGGCTTTCTTCAAGAAGATTACCATTTACTTGGATCAGGGTTTCTATCCGGATAACCATGTTGTTGTGTGGGATAGTGCCCGTTCGACTGCACAGCGCGATGGTTTTGAGGTGAAGAGGAAAGGAGATAAGGAATTCACGGCGGTTGTTAGAATGTCAATGAATTATTCGCCTGACAAATTTATGGTATCGGCTCAGCTGGCTAGAGTGTTAGGGGTTGAGTTTGACTCCCGCTCTAGGATCATTGCTGCTCTTTGGCACTATGTGAAGGCTAAGAAGTTGCAGAGTCCGAATGACCCTTCGTTCTTCATGTGTGATGCTTCTCTCCAAAGGGTGTTTGGGGAGGAGAAGATGAAATTTTCGGTGGCTTCGCAGAAGATATCACAGCATTTGTCACCTCCGCAGCCTATACACCTGGAGCATAAAATCAAGCTTTCGGGAAATTGTCCAGCCGGAGCTACGTGTTACGATGTGCAGGTTGATGTGCCTCTTCCACTAGAGAAGGACATGTCTTCATTCTTGGAAAGCACTGAGAAGCACAAAGAGATTGATGCTTTTGACAAACTGATCTCTGATTCCATAAAGAAGATCCATGAACATCATAGGAGACGGGCATTCTTTCTCGGCTTTAGTCAGTCCCCAGCAGAGTTTATTAATGCTTTGATAGCTTCTCAAAGCAAGGATCTGAAGCTTATTGCTGGAGATGTGAGCCAGAGTGTTGAGAATGAACGGCGTTCTGAATTCTACAATCAACCATGGGTGGAGGATGCTGTCATTCGCTACCTGACCAGGAAAAATGCTCGAAGTGATGCTCCTGGAAACATCTGA 1665 0.4661 MRLEKSTGNKFEKWNGAMTSNGERSNRQQTLNLLYLRINKLRTMNNNNPPKNAATPSFFTNPAAPSIPMNHPSPHLLSQTQPLPQAGASHFHGHFQLSQPQIHVLAQPHPIPPPQVHNNSNTNASVTTPAPPKRANHKPPSRPPGSSNTTQTSAFKTMELTVAPPRKKRSFPDKLIPDKVAKLVPESAIYAKLLELETHIDSVLVRKKIDVQENLRNPRCVRRTLRIYVYNTFSKQVKVEPGKIDVEELSWVLRITGRVLEDGKDPVADGVLPKENQRFSAFFKKITIYLDQGFYPDNHVVVWDSARSTAQRDGFEVKRKGDKEFTAVVRMSMNYSPDKFMVSAQLARVLGVEFDSRSRIIAALWHYVKAKKLQSPNDPSFFMCDASLQRVFGEEKMKFSVASQKISQHLSPPQPIHLEHKIKLSGNCPAGATCYDVQVDVPLPLEKDMSSFLESTEKHKEIDAFDKLISDSIKKIHEHHRRRAFFLGFSQSPAEFINALIASQSKDLKLIAGDVSQSVENERRSEFYNQPWVEDAVIRYLTRKNARSDAPGNI 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00529 554 ProSiteProfiles SWIB/MDM2 domain profile. 335 412 IPR003121 -
Vimu7g00529 554 Pfam SWIB/MDM2 domain 339 410 IPR003121 -
Vimu7g00529 554 Gene3D SWIB/MDM2 domain 332 417 IPR036885 -
Vimu7g00529 554 MobiDBLite consensus disorder prediction 116 130 - -
Vimu7g00529 554 SMART swib_2 336 415 IPR019835 -
Vimu7g00529 554 MobiDBLite consensus disorder prediction 141 158 - -
Vimu7g00529 554 SUPERFAMILY SWIB/MDM2 domain 331 420 IPR036885 -
Vimu7g00529 554 CDD SWIB_like 342 410 - -
Vimu7g00529 554 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 154 509 - -
Vimu7g00529 554 MobiDBLite consensus disorder prediction 106 170 - -
Vimu7g00529 554 MobiDBLite consensus disorder prediction 1 28 - -
Vimu7g00529 554 MobiDBLite consensus disorder prediction 44 90 - -
Vimu7g00529 554 MobiDBLite consensus disorder prediction 12 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00529 Vimu-Chr7 5465539 5469827 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Vimu7g00529 SWIB 6.3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00529 K11650 - gmx:100817271 870.152
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00529 7 5465539 5469827 Vimu7g00529 7 5465539 5469827 ECH