Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00486 ATGGCTCTTTGCTGCTCCACCTTCTTTTTTCCTGCTCTGTTTTCAATTCTTTTCTCAGCTGCTGCACTCTGTGCTTCCCAAAAAGTTCCCAACTACACATTTATGCGCAATGCAACGGCGGCACCAGACATCTCTTACTACGACTACATCGTAATTGGCGGCGGCACAGCAGGTTGTCCTCTTGCTGCGACGCTGTCCCAGAATTACAGCGTGTTGCTCCTTGAACGCGGTGGCTCACCCTACGGGAATCCCAACATCACCAACTTAGCAGCCTTCGGTGCTGCCCTCTCCGACACCTCCCCCACCTCTCCCGCTCAGCGTTTCATCTCCGAAGACGGCGTCATCAACTCAAGAGCCCGCGTCCTCGGCGGCGGAAGCTGCTTGAACGCTGGCTTTTACACTCGCGCCAGCCCTCAATATGCAAGGGAAGCGGGGTGGGATGGAGGGGCTGTGAATGAGTCGTACGAATGGGTGGAGAAGGTAGTTGCGTTTGAGCCAGAAGTGAAGCAGTGGCAGTCAGCTGTTCGGGAAGGGCTACTTGAGATAGGTGTTGTGCCTAATAATGGATTCACTTATGATCACATTGGTGGGACTAAGGTAGGAGGCACCATCTTTGACCACCAAGGCTTCAGACACACCGCTGCTGATCTTTTGCAGTATGCCAACCCCTCTGCAATTACCGTCCTTCTCCATGCCACCGTCCACAGGATCCTCTTTAGAGTCAAAGATGGATCTAAACCAATGGCTCATGGAGTGGTGTTCAGAGACTCATTGGGTCGTAAACACAAGGCGTACCTGAATCGTCATCCCAAGAGCGAGATCATTCTTTCGGCTGGTGCACTTGGAAGCCCACAACTTCTTATGTTGAGTGGAGTTGGGCCCAGACAACACCTTCGGGCCCATAACATCAGTGTAACATTTGACCAGCCTTTGGTGGGTCAGGGAATGTCAGATAACCCCATGAACGCCATCTTCGTCCCATCCCCTCAACCGGTGGAGATATCTCTCATTGAGGTGGTGGGTATCACCAGTTTTGGCAGTTACATTGAGGCTGCCAGTGGTGAAAACTTCGCCGGTGGTTCCCCTAGGGACTACGGAATGTTCTCCCCTAAGATTGGTCAACTGTCGAGGGTGCCGCCAAAAGAAAGGACCCCAGAGGCCATTGCTAAGGCAACAGAAGCGATGCAGGGTCTGGAGCAAGCAGCCTTCAGAGGAGGGTTCATCCTGGAGAAGATAATGGGTCCGATTTCAAGCGGGCATTTGGAGCTCCGAACCCGCGATCCAAACGAGAACCCGTCGGTGACCTTCAACTACTTCCAGGATCCCGTAGACTTGGAGAGATGCGTGCAGGGCCTTAGCACGGTGGAGAAGATAATCGAATCGAAGGCATTCGCTCCGTTCAGATATCCCAACATGCCACTGGCGATGCTTTTGAACATGACTGCAAATAGCCCCGTTAACTTGCTTCCCAAACACAGCAACTCCTCCCTCTCTCTCCAACAGTTCTGCAGAGACACGGTGATGACGATTTGGCACTACCACGGAGGCTGCCAAGTTGGAAAAGTGGTGGACAGGGACTACAAGGTTCTTGGTGTCGATGCACTTCGCGTTATCGATGGTTCCACCTTTAACTACTCTCCTGGGACTAATCCTCAGGCCACTGTTATGATGCTTGGCAGGTACATGGGACTTCAAATACTCACTCAGAGACTTCGTGCCACTGCTGCCGATCAAACACAACAATAA 1746 0.5241 MALCCSTFFFPALFSILFSAAALCASQKVPNYTFMRNATAAPDISYYDYIVIGGGTAGCPLAATLSQNYSVLLLERGGSPYGNPNITNLAAFGAALSDTSPTSPAQRFISEDGVINSRARVLGGGSCLNAGFYTRASPQYAREAGWDGGAVNESYEWVEKVVAFEPEVKQWQSAVREGLLEIGVVPNNGFTYDHIGGTKVGGTIFDHQGFRHTAADLLQYANPSAITVLLHATVHRILFRVKDGSKPMAHGVVFRDSLGRKHKAYLNRHPKSEIILSAGALGSPQLLMLSGVGPRQHLRAHNISVTFDQPLVGQGMSDNPMNAIFVPSPQPVEISLIEVVGITSFGSYIEAASGENFAGGSPRDYGMFSPKIGQLSRVPPKERTPEAIAKATEAMQGLEQAAFRGGFILEKIMGPISSGHLELRTRDPNENPSVTFNYFQDPVDLERCVQGLSTVEKIIESKAFAPFRYPNMPLAMLLNMTANSPVNLLPKHSNSSLSLQQFCRDTVMTIWHYHGGCQVGKVVDRDYKVLGVDALRVIDGSTFNYSPGTNPQATVMMLGRYMGLQILTQRLRATAADQTQQ 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00486 581 ProSitePatterns GMC oxidoreductases signature 2. 279 293 IPR000172 GO:0016614|GO:0050660
Vimu7g00486 581 SUPERFAMILY FAD-linked reductases, C-terminal domain 316 516 - -
Vimu7g00486 581 Gene3D - 47 559 IPR036188 -
Vimu7g00486 581 PIRSF Alcohol_oxidase 23 578 IPR012132 GO:0050660
Vimu7g00486 581 SUPERFAMILY FAD/NAD(P)-binding domain 46 569 IPR036188 -
Vimu7g00486 581 Pfam GMC oxidoreductase 415 560 IPR007867 GO:0016614
Vimu7g00486 581 Gene3D - 164 509 - -
Vimu7g00486 581 Pfam GMC oxidoreductase 47 320 IPR000172 GO:0016614|GO:0050660
Vimu7g00486 581 PANTHER OSJNBA0019K04.7 PROTEIN 16 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00486 Vimu-Chr7 5140958 5145852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00486 8 570 Miscellaneous Gene Families AT5G51950 57.719 0.0 666
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00486 - - gmx:100780028 1007.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00486 7 5140958 5145852 Vimu7g00486 7 5140958 5145852 ECH